Entry information : SmPrxII05-1_4 (SmPrxIIEa_4)
Entry ID 7413
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2011-02-23 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-02-23 (Christophe Dunand)
Peroxidase information: SmPrxII05-1_4 (SmPrxIIEa_4)
Name (synonym) SmPrxII05-1_4 (SmPrxIIEa_4)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmPrxII05-1_4
start..stop
S start..stop
SmPrxII05-2_91 473 9e-173 1..240 1..240
PtaPrxII05 265 1e-90 3..240 9..239
MpPrxII03 262 2e-88 73..240 144..311
PabPrxII178 256 8e-87 75..240 74..239
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3124001..3124723 723  
complement(join(3124001..3124723))


exon

Literature and cross-references SmPrxII05-1_4 (SmPrxIIEa_4)
DNA ref. Phytozome 11:   scaffold_4 (3124723..3124001)
mRNA ref. JGI transcript:   28066 [3' end]
EST ref. GenBank:   FE479594.1
Cluster/Prediction ref. UniGene:   Smo.415
Protein sequence: SmPrxII05-1_4 (SmPrxIIEa_4)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   240
PWM (Da):   %s   25070.18  
PI (pH):   %s   9.63
Sequence
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Send to Peroxiscan
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MASLAAAVVP SLVASSSRPQ IRHALLTTGR QFLRQRSSAL QASPSLYSRS SVYGTTISRA PSRSLATAAA VGTTTTKPSI AVGERIPDGE LSYFDESGAI QSIKVSDLTS KKKVVIFAVP  GAFTPTCSSK HVPGFIDKAD ELKSKGVDTI ACVSVNDAFV MKSWGEALGV NGKILMLSDG NGKFTRDLGV TVDLSDKVEG LGVRSRRYSL LAEDGIVKVL NLEEGGAYTV SSADEILKAL 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron) and ESTs. Unigene compiles the ESTs from both haplotypes.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCGC TAGCTGCCGC CGTCGTGCCA TCGCTCGTCG CGTCCTCGTC CAGGCCCCAA ATCCGCCACG CTCTCCTCAC CACTGGGCGA CAATTCCTCA GGCAGCGCTC GTCGGCGCTC  CAGGCATCGC CATCCCTGTA CAGTAGAAGC TCCGTCTATG GGACGACCAT CTCCAGGGCG CCATCGCGGA GCCTCGCCAC AGCCGCGGCG GTCGGCACCA CCACCACAAA GCCGAGCATC  GCGGTCGGGG AGAGGATTCC CGATGGAGAG CTCTCCTACT TCGACGAGAG CGGCGCCATC CAGAGCATCA AGGTGTCGGA CCTGACGAGC AAGAAGAAGG TGGTGATCTT CGCGGTGCCC  GGAGCTTTCA CGCCCACTTG CTCCTCCAAG CACGTCCCGG GATTCATCGA CAAGGCGGAC GAGCTCAAGT CCAAGGGGGT GGACACCATC GCCTGCGTCT CCGTGAACGA TGCCTTCGTC  ATGAAGTCGT GGGGCGAGGC GCTGGGCGTC AATGGCAAGA TCCTCATGCT GTCCGACGGC AATGGCAAGT TTACCCGCGA TCTGGGAGTG ACCGTGGATC TTTCAGACAA GGTGGAGGGA  TTGGGAGTGA GGTCCCGGCG CTACTCTCTG CTGGCCGAGG ATGGGATCGT CAAGGTGTTG AATCTCGAGG AGGGTGGTGC CTACACGGTG AGCAGCGCCG ACGAGATCCT CAAGGCACTC 
TAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCGC TAGCTGCCGC CGTCGTGCCA TCGCTCGTCG CGTCCTCGTC CAGGCCCCAA ATCCGCCACG CTCTCCTCAC CACTGGGCGA CAATTCCTCA GGCAGCGCTC GTCGGCGCTC  CAGGCATCGC CATCCCTGTA CAGTAGAAGC TCCGTCTATG GGACGACCAT CTCCAGGGCG CCATCGCGGA GCCTCGCCAC AGCCGCGGCG GTCGGCACCA CCACCACAAA GCCGAGCATC  GCGGTCGGGG AGAGGATTCC CGATGGAGAG CTCTCCTACT TCGACGAGAG CGGCGCCATC CAGAGCATCA AGGTGTCGGA CCTGACGAGC AAGAAGAAGG TGGTGATCTT CGCGGTGCCC  GGAGCTTTCA CGCCCACTTG CTCCTCCAAG CACGTCCCGG GATTCATCGA CAAGGCGGAC GAGCTCAAGT CCAAGGGGGT GGACACCATC GCCTGCGTCT CCGTGAACGA TGCCTTCGTC  ATGAAGTCGT GGGGCGAGGC GCTGGGCGTC AATGGCAAGA TCCTCATGCT GTCCGACGGC AATGGCAAGT TTACCCGCGA TCTGGGAGTG ACCGTGGATC TTTCAGACAA GGTGGAGGGA  TTGGGAGTGA GGTCCCGGCG CTACTCTCTG CTGGCCGAGG ATGGGATCGT CAAGGTGTTG AATCTCGAGG AGGGTGGTGC CTACACGGTG AGCAGCGCCG ACGAGATCCT CAAGGCACTC 
TAA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGGCTACATC GTTCGTTCGC GAGGCGGAGA ATCTCCGATA ATCTGTCCAT GGCGTCGCTA GCTGCCGCCG TCGTGCCATC GCTCGTCGCG TCCTCGTCCA GGCCCCAAAT CCGCCACGCT  CTCCTCACCA CTGGGCGACA ATTCCTCAGG CAGCGCTCGT CGGCGCTCCA GGCATCGCCA TCCCTGTACA GTAGAAGCTC CGTCTATGGG ACGACCATCT CCAGGGCGCC ATCGCGGAGC  CTCGCCACAG CCGCGGCGGT CGGCACCACC ACCACAAAGC CGAGCATCGC GGTCGGGGAG AGGATTCCCG ATGGAGAGCT CTCCTACTTC GACGAGAGCG GCGCCATCCA GAGCATCAAG  GTGTCGGACC TGACGAGCAA GAAGAAGGTG GTGATCTTCG CGGTGCCCGG AGCTTTCACG CCCACTTGCT CCTCCAAGCA CGTCCCGGGA TTCATCGACA AGGCGGACGA GCTCAAGTCC  AAGGGGGTGG ACACCATCGC CTGCGTCTCC GTGAACGATG CCTTCGTCAT GAAGTCGTGG GGCGAGGCGC TGGGCGTCAA TGGCAAGATC CTCATGCTGT CCGACGGCAA TGGCAAGTTT  ACCCGCGATC TGGGAGTGAC CGTGGATCTT TCAGACAAGG TGGAGGGATT GGGAGTGAGG TCCCGGCGCT ACTCTCTGCT GGCCGAGGAT GGGATCGTCA AGGTGTTGAA TCTCGAGGAG 
GGTGGTGCCT ACACGGTGAG CAGCGCCGAC GAGATCCTCA AGGCACTCTA AGCTCCAAGA GCTACATACG AGGTGATAGA ACTTCGTTTT TAC 

Retrieve as FASTA