Entry information : SbPrxII01 (Sobic.010G197200.1 [2.1] / Sb10g024630 [1.4] / SbPrxIIE01)
Entry ID 7420
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2011-01-28 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-08-05 (Christophe Dunand)
Peroxidase information: SbPrxII01 (Sobic.010G197200.1 [2.1] / Sb10g024630 [1.4] / SbPrxIIE01)
Name (synonym) SbPrxII01 (Sobic.010G197200.1 [2.1] / Sb10g024630 [1.4] / SbPrxIIE01)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrxII01
start..stop
S start..stop
ZmPrxII0501 348 1e-123 39..233 36..233
OsPrxII0501 310 4e-108 50..233 51..232
ScPrxII05 294 3e-102 15..233 1..211
OsPrxII0502 284 2e-98 69..233 62..225
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 53742369..53743070 702  
join(53742369..53743070)


exon

Literature and cross-references SbPrxII01 (Sobic.010G197200.1 [2.1] / Sb10g024630 [1.4] / SbPrxIIE01)
DNA ref. Phytozome 11:   chromosome_10 (53742368..53743070)
Protein sequence: SbPrxII01 (Sobic.010G197200.1 [2.1] / Sb10g024630 [1.4] / SbPrxIIE01)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   233
PWM (Da):   %s   23623.51  
PI (pH):   %s   8.73
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MATSALVALS ATTAAAAAGK RILLSRPTAA ASSLSFASRR LAAAAGPLRG LLGAPIRAVA SSASAPPKTI AVGDRLPDAT LSYFDTSSPD GELKTVTVRD LTAGKKVVLF AVPGAFTPTC 
TQKHLPGFVA KAGELRAKGV DAVACVSVND AFVMRAWKES LGIGDEVLLL SDGNGELARA MGVELDLSDK PVGLGVRSRR YALLAEDGVV KVLNLEEGGA FTNSSAEDML SAL 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 10, and 21 ESTs. Incorrect prediction from Phytozome (no ATG in the genomic: extra "g").
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAACCT CCGCCCTCGT CGCTCTGTCC GCCACCACGG CCGCCGCCGC CGCCGGGAAG CGCATCCTCC TCTCGCGCCC CACCGCCGCC GCCTCCTCCC TCTCCTTCGC CTCCCGCCGC  CTGGCTGCCG CCGCGGGGCC CCTCCGGGGG CTCCTCGGCG CGCCAATCCG GGCCGTGGCG TCGTCGGCGT CGGCGCCCCC CAAGACCATC GCGGTTGGGG ACCGGCTCCC TGACGCGACG  CTGTCCTACT TCGACACCTC CTCCCCCGAC GGCGAGCTGA AGACGGTGAC GGTCCGCGAC CTCACCGCGG GGAAGAAGGT GGTGCTCTTC GCGGTGCCCG GCGCGTTCAC GCCCACCTGC  ACCCAGAAGC ACCTCCCGGG CTTCGTGGCC AAGGCCGGGG AGCTCCGCGC CAAGGGCGTC GACGCCGTCG CCTGCGTCTC CGTCAACGAC GCCTTCGTGA TGCGCGCGTG GAAGGAGAGC  CTGGGAATCG GCGACGAGGT GCTGCTGCTG TCCGACGGCA ACGGGGAGCT GGCGCGCGCC ATGGGCGTCG AGCTCGACCT CTCCGACAAG CCCGTCGGGC TCGGCGTCCG CTCCCGCCGC 
TACGCGCTGC TCGCGGAGGA CGGCGTCGTC AAGGTGCTCA ACCTCGAGGA GGGCGGCGCG TTCACCAACA GCAGCGCCGA GGACATGCTC AGCGCGCTCT GA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCAACCT CCGCCCTCGT CGCTCTGTCC GCCACCACGG CCGCCGCCGC CGCCGGGAAG CGCATCCTCC TCTCGCGCCC CACCGCCGCC GCCTCCTCCC TCTCCTTCGC CTCCCGCCGC  CTGGCTGCCG CCGCGGGGCC CCTCCGGGGG CTCCTCGGCG CGCCAATCCG GGCCGTGGCG TCGTCGGCGT CGGCGCCCCC CAAGACCATC GCGGTTGGGG ACCGGCTCCC TGACGCGACG  CTGTCCTACT TCGACACCTC CTCCCCCGAC GGCGAGCTGA AGACGGTGAC GGTCCGCGAC CTCACCGCGG GGAAGAAGGT GGTGCTCTTC GCGGTGCCCG GCGCGTTCAC GCCCACCTGC  ACCCAGAAGC ACCTCCCGGG CTTCGTGGCC AAGGCCGGGG AGCTCCGCGC CAAGGGCGTC GACGCCGTCG CCTGCGTCTC CGTCAACGAC GCCTTCGTGA TGCGCGCGTG GAAGGAGAGC  CTGGGAATCG GCGACGAGGT GCTGCTGCTG TCCGACGGCA ACGGGGAGCT GGCGCGCGCC ATGGGCGTCG AGCTCGACCT CTCCGACAAG CCCGTCGGGC TCGGCGTCCG CTCCCGCCGC 
TACGCGCTGC TCGCGGAGGA CGGCGTCGTC AAGGTGCTCA ACCTCGAGGA GGGCGGCGCG TTCACCAACA GCAGCGCCGA GGACATGCTC AGCGCGCTCT GA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AAAAAAAAAA GTCAAAACAG AAACCTCCAG TCCAGCTGCA ACAGGCCATT TCCTCGACCG CATCGCCGCC CGTGCGCTCC GCCTCCATGG CAACCTCCGC CCTCGTCGCT CTGTCCGCCA  CCACGGCCGC CGCCGCCGCC GGGAAGCGCA TCCTCCTCTC GCGCCCCACC GCCGCCGCCT CCTCCCTCTC CTTCGCCTCC CGCCGCCTGG CTGCCGCCGC GGGGCCCCTC CGGGGGCTCC  TCGGCGCGCC AATCCGGGCC GTGGCGTCGT CGGCGTCGGC GCCCCCCAAG ACCATCGCGG TTGGGGACCG GCTCCCTGAC GCGACGCTGT CCTACTTCGA CACCTCCTCC CCCGACGGCG  AGCTGAAGAC GGTGACGGTC CGCGACCTCA CCGCGGGGAA GAAGGTGGTG CTCTTCGCGG TGCCCGGCGC GTTCACGCCC ACCTGCACCC AGAAGCACCT CCCGGGCTTC GTGGCCAAGG  CCGGGGAGCT CCGCGCCAAG GGCGTCGACG CCGTCGCCTG CGTCTCCGTC AACGACGCCT TCGTGATGCG CGCGTGGAAG GAGAGCCTGG GAATCGGCGA CGAGGTGCTG CTGCTGTCCG  ACGGCAACGG GGAGCTGGCG CGCGCCATGG GCGTCGAGCT CGACCTCTCC GACAAGCCCG TCGGGCTCGG CGTCCGCTCC CGCCGCTACG CGCTGCTCGC GGAGGACGGC GTCGTCAAGG  TGCTCAACCT CGAGGAGGGC GGCGCGTTCA CCAACAGCAG CGCCGAGGAC ATGCTCAGCG CGCTCTGAGT TTGCCACGCG CCGACGCCAC GGTTGGGTTC GTCGTCTCAA TCCCGGCAAA  AAGTTAGTTT TTTTTTTTCG TTTCTGAATA ATCGTGACGG CAACGGTGGC TTGTTCCTGC CGCCACTGTG TTGTTGTGAT CGGCGCTGTT ACTAGTGCAC TGCACTGCAG AGATGCAAGT  TTGTTGCGAA CATGGCAGTA GTATAGGTAT AGATTCCTGC AATTGTGGAC GCCCTCTGTT TCATTCATGG CTTGTCATGG TATGCTACAC TTGTCTGAGA ATTGCTCATA GTACCACTAC 
TATCACAGGC GTTCAGTGTG TTCAGTGTTC TTATCAAAGA GAAGGGGCGG CACAGCCGCA GTAT 

Retrieve as FASTA