Entry information : PpaPrxII0501 (PpaPrxIIE01)
Entry ID 7427
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-03 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-01-25 (Toky Ramarohetra (Scipio))
Peroxidase information: PpaPrxII0501 (PpaPrxIIE01)
Name (synonym) PpaPrxII0501 (PpaPrxIIE01)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella
Organism Physcomitrella patens    [TaxId: 3218 ]
Cellular localisation N/D
Tissue types Gametophore
Protonema
Sporophyte
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PpaPrxII0501
start..stop
S start..stop
PpaPrxII0502 391 5e-140 1..248 1..251
PabPrxII178 261 6e-89 72..243 68..239
PtaPrxII05 257 4e-87 45..243 40..239
NtPrxII0501a 246 4e-83 70..243 56..229
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1454166..1454912 747  
complement(join(1454166..1454912))


exon

Literature and cross-references PpaPrxII0501 (PpaPrxIIE01)
DNA ref. Phytozome 11:   scaffold_1 (1454912..1454166)
EST ref. GenBank:   FC446652.1 [5' end]   FC426229.1 [3' end]
Cluster/Prediction ref. UniGene:   Ppa.4231
Protein sequence: PpaPrxII0501 (PpaPrxIIE01)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   248
PWM (Da):   %s   25503.35  
PI (pH):   %s   8.96
Sequence
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Send to Peroxiscan
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MASAIASRVS SVGVVARREL ASSLTSKVPV ASLAVVARKA CLGTTQLLSS TSWLASCAGL KPAAKLATSS LSRSGVTQVM ATISVGDKLP EANLSYFDTE GNVQSVSVSE LTRGKKVVLF  AVPGAFTPTC SSKHLPGFVA NAEELRKAGV DTLACVSVND AFVMQAWAKS VGAGDKVLML SDGLAKFTQA LGTTVDLTDK VEGLGIRSRR YSMLVDDGVV KVLNLEEGGA FTSSSAEEIL 
SSLQKANA 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no introns) and 40 ESTs. Incorrect prediction from Phytozome (5'end is missing) confirmed by ESTs
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCAG CAATTGCAAG TAGGGTCTCA TCTGTAGGGG TCGTCGCGAG GCGGGAGTTA GCTTCCAGCT TAACTTCTAA GGTGCCGGTC GCATCCCTCG CTGTTGTTGC TAGGAAGGCT  TGCCTGGGTA CAACCCAGCT GCTCTCGAGC ACTTCATGGC TCGCATCCTG CGCAGGGCTG AAACCCGCCG CGAAACTTGC AACCTCGTCG TTGTCCCGCT CAGGGGTGAC CCAAGTGATG  GCCACGATTT CTGTTGGGGA TAAACTTCCA GAGGCCAATC TATCCTATTT CGATACGGAG GGCAATGTGC AGAGCGTGAG CGTGTCAGAG CTCACCAGGG GGAAGAAGGT GGTGCTATTT  GCTGTTCCTG GGGCCTTCAC CCCCACTTGT TCCTCTAAGC ATTTGCCCGG GTTTGTGGCC AACGCTGAGG AGCTTCGCAA GGCGGGCGTG GACACCTTGG CTTGCGTCTC TGTGAACGAC  GCCTTTGTGA TGCAGGCATG GGCGAAGAGC GTCGGTGCCG GCGACAAAGT GCTCATGCTG TCAGACGGTT TGGCCAAGTT TACTCAGGCT TTAGGAACAA CTGTGGACTT GACGGACAAG  GTAGAGGGAC TGGGCATTCG GTCGCGGCGG TATTCCATGC TCGTGGATGA CGGCGTGGTG AAGGTTTTGA ACTTGGAGGA AGGAGGCGCG TTCACTAGTA GCAGTGCTGA AGAAATTTTG 
AGCAGCTTGC AGAAGGCCAA TGCATAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCAG CAATTGCAAG TAGGGTCTCA TCTGTAGGGG TCGTCGCGAG GCGGGAGTTA GCTTCCAGCT TAACTTCTAA GGTGCCGGTC GCATCCCTCG CTGTTGTTGC TAGGAAGGCT  TGCCTGGGTA CAACCCAGCT GCTCTCGAGC ACTTCATGGC TCGCATCCTG CGCAGGGCTG AAACCCGCCG CGAAACTTGC AACCTCGTCG TTGTCCCGCT CAGGGGTGAC CCAAGTGATG  GCCACGATTT CTGTTGGGGA TAAACTTCCA GAGGCCAATC TATCCTATTT CGATACGGAG GGCAATGTGC AGAGCGTGAG CGTGTCAGAG CTCACCAGGG GGAAGAAGGT GGTGCTATTT  GCTGTTCCTG GGGCCTTCAC CCCCACTTGT TCCTCTAAGC ATTTGCCCGG GTTTGTGGCC AACGCTGAGG AGCTTCGCAA GGCGGGCGTG GACACCTTGG CTTGCGTCTC TGTGAACGAC  GCCTTTGTGA TGCAGGCATG GGCGAAGAGC GTCGGTGCCG GCGACAAAGT GCTCATGCTG TCAGACGGTT TGGCCAAGTT TACTCAGGCT TTAGGAACAA CTGTGGACTT GACGGACAAG  GTAGAGGGAC TGGGCATTCG GTCGCGGCGG TATTCCATGC TCGTGGATGA CGGCGTGGTG AAGGTTTTGA ACTTGGAGGA AGGAGGCGCG TTCACTAGTA GCAGTGCTGA AGAAATTTTG 
AGCAGCTTGC AGAAGGCCAA TGCATAA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CTTCATGGCT CGCATCCTGC GCAGGGCTGA AACCCGCCGC GAAACTTGCA ACCTCGTCGT TGTCCCGCTC AGGGGTGACC CAAGTGATGG CCACGATTTC TGTTGGGGAT AAACTTCCAG  AGGCCAATCT ATCCTATTTC GATACGGAGG GCAATGTGCA GAGCGTGAGC GTGTCAGAGC TCACCAGGGG GAAGAAGGTG GTGCTATTTG CTGTTCCTGG GGCCTTCACC CCCACTTGTT  CCTCTAAGCA TTTGCCCGGG TTTGTGGCCA ACGCTGAGGA GCTTCGCAAG GCGGGCGTGG ACACCTTGGC TTGCGTCTCT GTGAACGACG CCTTTGTGAT GCAGGCATGG GCGAAGAGCG  TCGGTGCCGG CGACAAAGTG CTCATGCTGT CAGACGGTTT GGCCAAGTTT ACTCAGGCTT TAGGAACAAC TGTGGACTTG ACGGACAAGG TAGAGGGACT GGGCATTCGG TCGCGGCGGT  ATTCCATGCT CGTGGATGAC GGCGTGGTGA AGGTTTTGAA CTTGGAGGAA GGAGGCGCGT TCACTAGTAG CAGTGCTGAA GAAATTTTGA GCAGCTTGCA GAAGGCCAAT GCATAAAGAC  CTGTACATCT CTTTTTCTCT GGATTTGTGT ACAAGCTTTG TAAGTATCTC CCGAAGTTAT AATTCAGAAA CTCTACGGTT GTTCTGTGTG TACCATTTGT GTGTTTTTAA CAATCTTTAA  GTGGAGATTG CAACCTCAGA ATTTCGGATT ACGGAGGAAT TGGTCTTTAA ACTTGTCTGT TAAGGATCTT TCGGTGCTCG GCAAGGGTTC GTTCGACTCG TGTTCTACCT CGAAGGGTTT  TCCTCAACCC TCTTTCTTTG GAGTAAAACA ATGAGTGCTT CGAACACCGC TCTATGCCGC ACTCGTAGGA GATGATTATC TCAAATGAGC AGACCACTGT CGAGTTCAGT TTCGAAGCCT  CTATCCGAGG GGGTGTGAAA AAAAATCCTG TCGATGATAT TGAACCTTTT TCTATGTTTG TGTACAATTG TGACAGTGTT GAGTTGGTTG CGGGACGAGC AAAGCAGCGT TTGAGAACTG  TGTGTATGTA GGGTTGGACA GGTACTGGCC TGTGCGGTGC GTTGTATAAT TTAGTAGGAT ACAGTGAAGC AGACTGTTGC GAATTGCCCA GGGACGTGAA AATTAAGTCC TTGCTGGAAT  TTTGTAATAT CCTTGAGTGG CATTTGCATT ACGTCTATCT ATCCCCGTTC TTCAGAACCT GTTTCAGGCT TTAAATCTGA GAGCGCTTGA GCAGTTTCGT TCACTGAATT TTTGCCTTGT  GTTCGAATCT TGCTTGCAAT CAACTCATGC GTTGTTAAGA TTTATAGACT GAGCGAGATT AACACAATTG GTAGTCAGGG TTTGCATTAT CATCTATTTC ATCGTATTGA CTTCGCCTCC  GTGTAAGTTA AACAATGAGG ATTATAATGT TCAACTCATG TTTGAAGTCC TTCAAGCTCG TGATAACGCT GAACGGATCA ATCCTGCGTA AAAGTGCAAA ATCCACTGCC CGTATTCGAA  TGTGATTTTT CTGATATGCA TCGCCAAGAA GACAACACTG TATTCACATC TGGCGCTGGA GAATGCAGCT ACAGGTACTT TCAAGTTATT TCTTTTCTCA ACAGCACACG GAATGTCTCC 
TGGAAACAGC CTACTTGAG 

Retrieve as FASTA