Entry information : PpaPrxII0502 (PpaPrxIIE02)
Entry ID 7429
Creation 0000-00-00 (Christophe Dunand)
Last sequence changes 2010-06-03 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-02-02 (Christophe Dunand)
Peroxidase information: PpaPrxII0502 (PpaPrxIIE02)
Name (synonym) PpaPrxII0502 (PpaPrxIIE02)
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Funariaceae Physcomitrella
Organism Physcomitrella patens    [TaxId: 3218 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PpaPrxII0502
start..stop
S start..stop
PpaPrxII0501 402 2e-144 1..251 1..248
PabPrxII178 264 6e-90 66..246 65..239
PtaPrxII05 259 8e-88 66..246 65..239
PpaPrxII0503 254 8e-84 85..248 152..315
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1908277..1909032 756  
complement(join(1908277..1909032))


exon

Literature and cross-references PpaPrxII0502 (PpaPrxIIE02)
DNA ref. Phytozome 11:   scaffold_52 (1909032..1908280)
EST ref. GenBank:   FC424260.1 [5' end]   DC920380.1 [3' end]
Cluster/Prediction ref. UniGene:   Ppa.7914
Protein sequence: PpaPrxII0502 (PpaPrxIIE02)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   251
PWM (Da):   %s   25545.4  
PI (pH):   %s   10.11
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASAIASKVS AVGAVARREL APSVASKASV ASLVAARKAC LGTSQSLSSV SWVASRVGLK KPAARFVSSS SSSSSRSGAG QVVATISVGD KLPEAQLSYF DKDGNVQSVS VSELTKGKKV  VLFAVPGAFT PTCSSKHLPG FVAKADELRK AGVDTLACVS VNDAFVMQAW GKSAGVGDSV LMLSDGLAKF TQALGTAVDL TDKVEGLGIR SRRYSMLVED GVVKVLNLEV GGAFTNSSAE 
EILSSLQKAN A 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron) and 60 ESTs. Incorrect prediction from Phytozome (large 5'end is missing) confirmed by ESTs
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCCG CAATTGCAAG CAAGGTCTCA GCAGTGGGAG CCGTGGCGAG GCGAGAATTG GCGCCGAGCG TGGCTTCCAA AGCCTCGGTT GCATCGCTCG TCGCCGCCAG GAAGGCTTGC  CTCGGCACCA GCCAGTCTCT GTCGAGCGTC TCATGGGTCG CGTCCCGCGT AGGGTTGAAG AAGCCCGCCG CTAGATTTGT nnnnnnnnnn nnnnnnnnnn nnnnCCGATC AGGGGCGGGG 
CAAGTGGTGG CCACGATTTC CGTGTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGTCCG CAATTGCAAG CAAGGTCTCA GCAGTGGGAG CCGTGGCGAG GCGAGAATTG GCGCCGAGCG TGGCTTCCAA AGCCTCGGTT GCATCGCTCG TCGCCGCCAG GAAGGCTTGC  CTCGGCACCA GCCAGTCTCT GTCGAGCGTC TCATGGGTCG CGTCCCGCGT AGGGTTGAAG AAGCCCGCCG CTAGATTTGT nnnnnnnnnn nnnnnnnnnn nnnnCCGATC AGGGGCGGGG 
CAAGTGGTGG CCACGATTTC CGTGTAA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AGCCACCTTC AAGCCCTCTC CTTCAAACCC CGCCCCACCC TCCCGCTCCA CTACGCCTCA TCCTTGCTTA AGCCGCAGAC GATCGTGTTT TTTGTTGTGT TTTTATTCTC TGGGTCTTCA  TTCCCAACCG GAAATCATCA ACAATGGCGT CCGCAATTGC AAGCAAGGTC TCAGCAGTGG GAGCCGTGGC GAGGCGAGAA TTGGCGCCGA GCGTGGCTTC CAAAGCCTCG GTTGCATCGC  TCGTCGCCGC CAGGAAGGCT TGCCTCGGCA CCAGCCAGTC TCTGTCGAGC GTCTCATGGG TCGCGTCCCG CGTAGGGTTG AAGAAGCCCG CCGCTAGATT TGTGTCCTCG TCGTCGTCGT  CGTCGTCCCG ATCAGGGGCG GGGCAAGTGG TGGCCACGAT TTCCGTGGGG GACAAACTCC CCGAGGCGCA GCTCTCGTAT TTCGACAAGG ATGGCAATGT GCAGTCCGTG AGTGTGTCGG  AACTCACAAA AGGTAAGAAA GTGGTGCTCT TTGCTGTTCC TGGTGCCTTC ACCCCTACTT GCTCGTCCAA GCATTTGCCC GGGTTCGTGG CCAAGGCCGA CGAGCTCCGG AAGGCGGGCG  TGGACACCTT GGCTTGCGTC TCGGTGAACG ATGCCTTCGT GATGCAGGCG TGGGGGAAGA GCGCCGGCGT TGGCGACAGC GTGTTGATGC TGTCTGATGG TTTGGCCAAG TTTACCCAGG  CTTTGGGTAC AGCTGTTGAT TTGACTGATA AGGTAGAGGG GTTGGGCATT CGGTCGCGGA GATATTCCAT GCTTGTGGAG GACGGCGTAG TGAAGGTATT GAACTTGGAG GTGGGTGGCG  CCTTCACGAA CAGCAGTGCT GAGGAGATTT TGAGCAGTCT GCAGAAGGCC AATGCCTAAA ATGCAACTTT CATGCTTCGG TTTTCTGGGA GCTGCGTGCA TGCTTGGAAT TACACTGTTG  AGTCAGTTTG TAGACGTGTC AAACAGTGTT CGAGGGTTCA TGGCGTAGGG TAAGGCAGGT GCCTCCTGAT GTGAGTTAAG CGTGTTCGGT GCGTTGTACA TTCGGGAAAG AAACAGCGAA  GCAGGCTCGT GCGGATTGCT CCAGGCACGT AGGCATTAAT TACTCGCTGG ATTTTTGTAG TATCACAAAC AGGCACTTGC AGTAGTTCTG TTTATATCTG TTTTCCAGAA TGTATTTCGG 
AGCTTAAGTC TATAATTGA 

Retrieve as FASTA