Entry information : PtPrxII[P]E
Entry ID 7436
Creation 2010-07-12 (Christophe Dunand)
Last sequence changes 2010-08-02 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2011-01-28 (Christophe Dunand)
Peroxidase information: PtPrxII[P]E
Name PtPrxII[P]E
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtPrxII[P]E
start..stop
S start..stop
PtrtrPrxII05 179 7e-59 1..125 97..218
PtPrxII05 176 2e-57 1..125 97..218
LuPrxII16 173 2e-56 1..125 106..228
LuPrxII02 172 7e-56 1..125 108..230
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 8002015..8002385 371  
complement(join(8002015..8002385))


exon

Literature and cross-references PtPrxII[P]E
DNA ref. Phytozome 11:   scaffold_12 (8002385..8002015)
Protein sequence: PtPrxII[P]E
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   123
PWM (Da):   %s   12790.61  
PI (pH):   %s   4.9
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
PGAFTPTWSQ KHLSSFVEKL EKLKSKGVDT IACILVNDVF VMRA*KENLV xKDDDGVxVL SSKGNGDFTK AIG*ELDLSD QTVGLGVRSR RYVLLxEDGV VxKVFNLEEG GTFTFSGGDD 
MLKAL 

Retrieve as FASTA  
Remarks Pseudogene. Sequence from genomic (chromo 12). 5' and 3' ends are missing. Stop codons and several frame shift.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGAGAACTCC AAACCACCAC AATCTCTTCC CTAAAATCCA ACAAAAAATG AATACTCTTC GTCATCCCAG GCGCCTTCAC CCCAACATGG TCTCAAAAAC ACCTTTCAAG CTTCGTGGAG  AAATTGGAAA AGCTAAAGTC AAAAGGGGTC GATACAATCG CATGCATATT AGTGAATGAT GTTTTTGTGA TGAGAGCATG AAAGGAGAAT TTGGTACAAA AGATGATGAT GGAGTGTGCT  CTCGTCTAAG GGGAATGGGG ATTTTACAAA GGCAATTGGG TGAGAGTTGG ATTTGAGTGA TCAAACTGTT GGGCTAGGAG TGAGGTCAAG GAGGTATGTA TTATTGGAAG ATGGGGTTGT 
TAAGGTTTTT AATTTGGAGG AAGGAGGAAC TTTTACTTTT AGTGGAGGTG ATGATATGCT TAAAGCTCTT 

Retrieve as FASTA