Entry information : PtGPx[P]02 (POPTR_0017s06160)
Entry ID 7437
Creation 2010-07-12 (Christophe Dunand)
Last sequence changes 2012-03-08 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-03-08 (Qiang Li)
Peroxidase information: PtGPx[P]02 (POPTR_0017s06160)
Name (synonym) PtGPx[P]02 (POPTR_0017s06160)
Class Plant glutathione peroxidase     [Orthogroup: Gpx2003]*
Taxonomy Eukaryota Viridiplantae Streptophyta Salicaceae Populus
Organism Populus trichocarpa (Western balsam poplar)    [TaxId: 3694 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtGPx[P]02
start..stop
S start..stop
PtGPx02 246 1e-85 1..153 15..167
HbGPx02 229 1e-78 1..153 15..167
EglGPx01 228 8e-78 1..153 50..202
EgrGPx02 227 2e-77 1..153 50..202
Literature and cross-references PtGPx[P]02 (POPTR_0017s06160)
DNA ref. Phytozome 11:   scaffold_17 (4773097..4768876)
Protein sequence: PtGPx[P]02 (POPTR_0017s06160)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   152
PWM (Da):   %s   16100.3  
PI (pH):   %s   8.45
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
QDIHGNDVSL SKNSEKVLEI VNVVKLVGII NxxxxxxNVL YEMYKSQGFE ILAFPCNQCA GQEPGSNEKI QDTVCTIFRA EFPIFDKIDV NGKNTAPVYK F*KSEKGGYF GVAIKWNFTK 
SVVNKGGKVV ERYAPTTSPL KIEKDMQNLL GSS 

Retrieve as FASTA  
Remarks Pseudogene. Sequence from genomic (chromo 17, 3 introns). 5' and 3' ends are missing. complement(join(4768876..4768905,4768994..4769161,4769246..4769362,4769468..4769498, 4773005..4773097))
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AACGTTTTGT ATGAAATGTA CAAAAGCCAA GGTTGATCAC TCATTTTGGA GGGCAACATC TCTGTTTTTG AGTCGTCTGT TTTAAAATCT CCATTGATTG GAGATTTTAA CTTCTCGGCT  GGCACGATTA TGGCAGGTTT TGAGATCTTG GCATTTCCTT GCAACCAGTG TGCTGGACAA GAACCTGGAA GCAATGAAAA GATTCAGGAC ACTGTATGCA CTATTTTCAG AGCCGAATTC  CCCATCTTTG ACAAGGTAAT GGTTGTAAAG ACCTATTAAT TCTTCTTTCT GAAAGAATGT GGAAATGTTT TGAATATGCT CCATCTGGTT ATTGCAGATT GATGTGAACG GGAAGAATAC  AGCACCTGTC TACAAGTTCT AAAAATCAGA GAAAGGAGGA TATTTTGGAG TTGCCATCAA GTGGAACTTT ACCAAATCTG TGGTAAACAA AGGAGGAAAG GTTGTGGAAA GATATGCTCC  AACTACATCA CCTCTTAAAA TTGAGGTTAG ATCATTTGTT TTTCCTATTA CAACATTTGA GTCTCAAGAA TTTCTGTGAA CTTCATCTCA CACTCCTTCA TTCCATTTTG CAGAAAGACA 
TGCAGAATCT GCTGGGATCT TCC 

Retrieve as FASTA