Entry information : AtPrx[P]29 (At3g42570)
Entry ID 7438
Creation 2010-07-16 (Christophe Dunand)
Last sequence changes 2011-01-27 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2015-06-03 (Christophe Dunand)
Peroxidase information: AtPrx[P]29 (At3g42570)
Name (synonym) AtPrx[P]29 (At3g42570)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis thaliana    [TaxId: 3702 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtPrx[P]29
start..stop
S start..stop
AhalPrx23 219 5e-73 1..123 84..206
AlyPrx29 217 3e-72 1..123 84..206
AtPrx29 213 1e-70 1..123 84..206
BstrPrx17 209 3e-69 1..121 84..204
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 14689973..14690347 375  
join(14689973..14690347)


exon

Literature and cross-references AtPrx[P]29 (At3g42570)
DNA ref. Phytozome 12:   Chr3 (14689973..14690347)
Cluster/Prediction ref. Phytozome Gene 12:   19659304
Omic ref. ePlant:   At3g42570 TAIR:   At3g42570
Protein sequence: AtPrx[P]29 (At3g42570)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   124
PWM (Da):   %s   12936.56  
PI (pH):   %s   4.27
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GCDASILLEP SGDQQFTELD SVENLGIKKR DLIGSIKTSL EHECPKQVSC SDVIILSARD TVALTGGPLI SVLLGRKDSL STPSKHVADS EPPPSTADVD TTLSLFASNG MTIEQSVAIM 
GIYL 

Retrieve as FASTA  
Remarks Pseudogene. Sequence from genomic (chromo 3, no intron). Exon 1 and 4 are missing.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGTTGTGACG CATCAATCCT ACTCGAGCCA AGTGGGGACC AACAGTTCAC TGAGCTTGAT TCAGTTGAGA ACTTAGGAAT CAAAAAGAGG GACCTGATTG GCTCTATCAA AACCTCACTG  GAGCATGAGT GTCCCAAGCA AGTCTCATGC TCTGACGTCA TCATCCTCTC CGCCAGAGAC ACCGTGGCTC TCACGGGAGG CCCACTCATT TCCGTGCTAT TAGGACGAAA AGACTCCCTC  TCCACTCCAA GCAAACACGT GGCAGACTCT GAGCCTCCTC CCTCCACTGC TGATGTTGAC ACCACCTTAA GCCTATTCGC TAGCAATGGC ATGACCATTG AACAGTCTGT GGCCATTATG 
GGTATATATT TATAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGTTGTGACG CATCAATCCT ACTCGAGCCA AGTGGGGACC AACAGTTCAC TGAGCTTGAT TCAGTTGAGA ACTTAGGAAT CAAAAAGAGG GACCTGATTG GCTCTATCAA AACCTCACTG  GAGCATGAGT GTCCCAAGCA AGTCTCATGC TCTGACGTCA TCATCCTCTC CGCCAGAGAC ACCGTGGCTC TCACGGGAGG CCCACTCATT TCCGTGCTAT TAGGACGAAA AGACTCCCTC  TCCACTCCAA GCAAACACGT GGCAGACTCT GAGCCTCCTC CCTCCACTGC TGATGTTGAC ACCACCTTAA GCCTATTCGC TAGCAATGGC ATGACCATTG AACAGTCTGT GGCCATTATG 
GGTATATATT TATAA 

Retrieve as FASTA