Entry information : BdiAPx-R (Bradi3g40330)
Entry ID 7459
Creation 2010-08-09 (Christophe Dunand)
Last sequence changes 2010-08-09 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-05-03 (Christophe Dunand)
Peroxidase information: BdiAPx-R (Bradi3g40330)
Name (synonym) BdiAPx-R (Bradi3g40330)
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BdiAPx-R
start..stop
S start..stop
HvAPx-R 555 0 1..328 1..331
TaAPx-Ra 552 0 1..329 1..333
FarAPx-R 540 0 1..329 1..332
ObrAPx-R 524 0 1..329 1..331
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 42505417..42505493 77 N° 2 42505587..42505699 113 N° 3 42506060..42506150 91 N° 4 42506424..42506551 128
N° 5 42506781..42506851 71 N° 6 42506981..42507023 43 N° 7 42507105..42507201 97 N° 8 42507335..42507418 84
N° 9 42507700..42507821 122 N° 10 42507911..42507971 61 N° 11 42508130..42508232 103  
join(42505417..42505493,42505587..42505699,42506060..42506150,42506424..42506551 ,42506781..42506851,42506981..42507023,42507105..42507201,42507335..42507418,425 07700..42507821,42507911..42507971,42508130..42508232)


exon

Literature and cross-references BdiAPx-R (Bradi3g40330)
DNA ref. Phytozome 12:   Bd3 (42505417..42508232)
Cluster/Prediction ref. UniGene:   Bdi.11061
Protein sequence: BdiAPx-R (Bradi3g40330)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   329
PWM (Da):   %s   35331.87  
PI (pH):   %s   6.75
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MELTNIPHLASSSNFFFSSCSRCSCRGRRTEKAVIAVSVAGIRCGADSACSEITEQQNLDSLGSKNSRCYRRRDFAAAALIPFLLPRVDMASAAESYDASIIQNGARNVLSKVKAAGVLRLVFHDAGTFDVAEKGGMNGSIIYEVDRPENAGLSKSLKILQKAKEGIDQIQVSWADLIAVAGAEAVALCGGPEIPVRLGRLDSSIADPVGKLPEETLDAVALKTSFRNKGFSTQEMVVLSGAHTIGGKGFGNPNVFDNSYFKVLLEKPRPTSGMPIGLPTDWALTEDDECLRWINIYAEDQAKFFADFQDAYTKLVNSGASWRTA

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 3, 10 introns) and 23 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGCTCACCAACATCCCCCATCTCGCCTCCTCCTCCAACTTCTTCTTCTCCAGCTGCAGTCGCTGTTCCTGCAGGTAATGTTTTCGTCCATTATCAGGCTCTAATTCCAGCCATGCA
GTCATGAGTACATGGGATGCAAATCACCTGTGAAAATTGTGATGCTACAGGGGCAGAAGAACCGAGAAGGCGGTGATAGCAGTGTCTGTTGCTGGAATTAGGTGCGGTGCTGATTCTGCA
TGTTCAGAAATCACTGAGCAGCAAAATCTAGATTCCCTTCCAG
GTACGGCGCAGTAGATATGTTTTGTGCTTCAGTTAGAACATGAAATGTTTCCCGGCTAATTTCCTAGTAAATCATTC
TGTAGTGTCAAGAGCAGTTAGAACAACTCTTAGGGAAGTCTGCACCTTGAAAATTATTGCTGATAAATAGTATACTTCCCACCAGGATTTCCAGAATTAAGGCTAGTAACTACAATTGGA
CATTTTTTCCATAAACTTGGTCGAACTTTACGAAAATTGAAATAAGACAAAGCTAGAACATCTTATAATTTGGAGCCGAGGGAGTAAGAATTAAGAAGTTTCTTCAAGTTTGTGCTAGTA
TATTGCTGGCGAGTTGAATTTGCTTTGTGTACAATGGCCTCAGGTTCTAAAAATTCCCGCTGTTACAGAAGGAGAGACTTTGCTGCTGCTGCTCTGATCCCTTTTCTACTTCCTCGTGTT
GATATGGCAAGTGC
GTAAGTACACTATTCGACCACTATCACTTTCCTACTTTGCACTTAGTTATAATAGCTATGAGTTCCTAACATTATTGACCTGCATTTACATGAGCATTTTTGTCAT
GACTCATGATCGATTTGTTCGACTGTGCAAGCATGAACTATTAAAAAATGAAGTGGGCCTATGATAGAGATTTGCAGAGAAGAGTGACCTGATCAAAGTTGTTTCTTGCTATTAAACACC
AGTATTGAAACTTTAGAGAAGTTCCCTGATTACGATTAACTTTATAGGGCTGAGTCATATGATGCATCAATTATTCAAAATGGTGCGAGGAATGTTTTATCCAAGGTCAAAGCTGCTGGC
GTGCTTCGTTTGGTTTTCCATGATGCAGGGACTTTTGATGTTGCTGAAAAATCAG
GTTTAGTCATGTTTGTCTTCAGCTACCAAAGTTTTCCCTAAACCAGCGACAATTCGGATGGGAGG
GAGTAATAGTTTCTGAGCAAGGATTGCAGGTGTTTAAAAGCCTAATGATTTAAAATTGGGAAATCAAATATGCTAAAGTATGGTTCGAAGATATCGAACAGTGGATTTTTTGCAAAGCAG
AAAAAAATAGGCAAACATCGGTAATTGGTTGCACTATGTTGCAGGTGGCATGAATGGCTCTATAATTTATGAAGTTGACAGACCTGAAAATGCTGGACTAAGTAAATCTTTAAAGGTTTT
TTATTTTTCTGAAAGTACCTTTACAGCACATCTTTCTTCTTTGCTTGTTGTCATGTATAGTGCGATTTCCTACTGAGGAACACCTGACTTGACATGTCTGTTTGATCGCTTTAAAACTGA
ATAGATACTGCAAAAAGCAAAAGAAGGAATCGATCAAATTCAGAAAGGTATGTTCTTTACACGTGTGTTGTCTTTATTGAACAAAGCTTTCTGTATCCTGAAGTCAATCTATTATTGTTC
CGCTATAGTATCATGGGCAGACTTGATTGCGGTGGCTGGTGCCGAGGCAGTTGCACTCTGTGGAGGGCCTGAAATTCCAGTAAGACTAGGCCGATTAGATTCCAGGTGCAACATAGTAGT
TTCTTCATTTTACAATGTCCACAGAGTATTACTCAAACTTTAAGCTATTCCATGAGTTGTTTCTATTTACTCTACCTATCTGCCTGAATTCTTCTGAAAGAATGCTTTTGCCGCGTAGCA
TTGCTGATCCTGTTGGCAAACTTCCTGAAGAAACATTGGATGCTGTTGCCTTGAAAACATCATTCAGAAACAAGGGTTTTTC
GTGAGTCCTTTTATTTATTAACTTTCTTTATCGCTGTC
CATTCTGGAATTGATATACTCCCTCCGTCCCATATTAAGTGACGAAATATAACATATATCTAGACATTTTTTTGAGTATAGATACATCCATATTTAGGCAAATTTGAATCACTTAATATG
GGACGGAGGGAGTACCAAGTTTAGCAATGGTTAACCAAAATTGTAAATTTGTATCGGTGTTTATGGTTGGCCAAAAGCACCTAGTGTCCACCCAAGACTGAAATTAAAATTGATACATGG
CAGAACACAGGAGATGGTCGTTTTATCTGGAGCACACACAATTGGAGGTAAAGGATTCGGGAATCCAAATGTTTTTGACAACTCCTATTTCAAAGTACTCCTTGAGAAGCCACGGCCCAC
TTCAT
GTAAGTGATTGTGATATTATCATCACGCCCTTTAAATCCCTGTAAATCATATCTTGATGTAATGCACTGTGCTCTTTTTCTTTGTGAAGCCGGCATGCCGATAGGGCTGCCCACA
GATTGGGCACTCACTGAAGACGATGAGTGCTTAAG
GTATTCTCTAGAAGCAGACGATCAGCTTTTCATAACATTCGATTGCCCATAGTGACGTTTAAAAATCTAGGCCAAATGGACTTTT
AGCCTTTTTATTTGCATATTAAATTACATCAGTGTTCAGCTTACTGACATTGGAGATACCAAACTGCTTGCAGATGGATCAATATATATGCAGAGGACCAGGCTAAATTTTTCGCCGATT
TCCAAGATGCATACACCAAGCTTGTAAATAGCGGAGCCTCCTGGAGAACAGCTTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGCTCACCAACATCCCCCATCTCGCCTCCTCCTCCAACTTCTTCTTCTCCAGCTGCAGTCGCTGTTCCTGCAGGGGCAGAAGAACCGAGAAGGCGGTGATAGCAGTGTCTGTTGCT
GGAATTAGGTGCGGTGCTGATTCTGCATGTTCAGAAATCACTGAGCAGCAAAATCTAGATTCCCTTCCAG
GTTCTAAAAATTCCCGCTGTTACAGAAGGAGAGACTTTGCTGCTGCTGCT
CTGATCCCTTTTCTACTTCCTCGTGTTGATATGGCAAGTGC
GGCTGAGTCATATGATGCATCAATTATTCAAAATGGTGCGAGGAATGTTTTATCCAAGGTCAAAGCTGCTGGCGTGCTT
CGTTTGGTTTTCCATGATGCAGGGACTTTTGATGTTGCTGAAAAATCAG
GTGGCATGAATGGCTCTATAATTTATGAAGTTGACAGACCTGAAAATGCTGGACTAAGTAAATCTTTAAAG
ATACTGCAAAAAGCAAAAGAAGGAATCGATCAAATTCAGAAAGTATCATGGGCAGACTTGATTGCGGTGGCTGGTGCCGAGGCAGTTGCACTCTGTGGAGGGCCTGAAATTCCAGTAAGA
CTAGGCCGATTAGATTCCAG
CATTGCTGATCCTGTTGGCAAACTTCCTGAAGAAACATTGGATGCTGTTGCCTTGAAAACATCATTCAGAAACAAGGGTTTTTCAACACAGGAGATGGTC
GTTTTATCTGGAGCACACACAATTGGAGGTAAAGGATTCGGGAATCCAAATGTTTTTGACAACTCCTATTTCAAAGTACTCCTTGAGAAGCCACGGCCCACTTCAT
CCGGCATGCCGATA
GGGCTGCCCACAGATTGGGCACTCACTGAAGACGATGAGTGCTTAAG
ATGGATCAATATATATGCAGAGGACCAGGCTAAATTTTTCGCCGATTTCCAAGATGCATACACCAAGCTTGTA
AATAGCGGAGCCTCCTGGAGAACAGCTTAA

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
AACCACACAA GGGCATGGAT AGCAAGGTAC AGATTGGCTG ACTAGTGAGT TGTGTCTTTT TTCCTATTTC GTTTCAGTGC AGTAGAAGCC ATTACTGCAT TCAAACAAGG CAAGTAGGAA  GAAGGATGGA GCTCACCAAC ATCCCCCATC TCGCCTCCTC CTCCAACTTC TTCTTCTCCA GCTGCAGTCG CTGTTCCTGC AGGGGCAGAA GAACCGAGAA GGCGGTGATA GCAGTGTCTG  TTGCTGGAAT TAGGTGCGGT GCTGATTCTG CATGTTCAGA AATCACTGAG CAGCAAAATC TAGATTCCCT TCCAGGTTCT AAAAATTCCC GCTGTTACAG AAGGAGAGAC TTTGCTGCTG  CTGCTCTGAT CCCTTTTCTA CTTCCTCGTG TTGATATGGC AAGTGCGGCT GAGTCATATG ATGCATCAAT TATTCAAAAT GGTGCGAGGA ATGTTTTATC CAAGGTCAAA GCTGCTGGCG  TGCTTCGTTT GGTTTTCCAT GATGCAGGGA CTTTTGATGT TGCTGAAAAA TCAGGTGGCA TGAATGGCTC TATAATTTAT GAAGTTGACA GACCTGAAAA TGCTGGACTA AGTAAATCTT  TAAAGATACT GCAAAAAGCA AAAGAAGGAA TCGATCAAAT TCAGAAAGTA TCATGGGCAG ACTTGATTGC GGTGGCTGGT GCCGAGGCAG TTGCACTCTG TGGAGGGCCT GAAATTCCAG  TAAGACTAGG CCGATTAGAT TCCAGCATTG CTGATCCTGT TGGCAAACTT CCTGAAGAAA CATTGGATGC TGTTGCCTTG AAAACATCAT TCAGAAACAA GGGTTTTTCA ACACAGGAGA  TGGTCGTTTT ATCTGGAGCA CACACAATTG GAGGTAAAGG ATTCGGGAAT CCAAATGTTT TTGACAACTC CTATTTCAAA GTACTCCTTG AGAAGCCACG GCCCACTTCA TCCGGCATGC  CGATAGGGCT GCCCACAGAT TGGGCACTCA CTGAAGACGA TGAGTGCTTA AGATGGATCA ATATATATGC AGAGGACCAG GCTAAATTTT TCGCCGATTT CCAAGATGCA TACACCAAGC  TTGTAAATAG CGGAGCCTCC TGGAGAACAG CTTAATCAGA TTTACCATGT TTGTATAAGA TTCGGTCAAA AAAAATTGTC CACACCTTGG TGTTTGCGCA TTATTTACTG ATGAAGTGGC 
TCGTTTGGTA ATGGGAACTT ATATGAATCT TCAGAAAACA GAACATGCTC GTTTGGACTA ACAAACGGCT GAATAAAACT AAAAGCATCG AGTTTATTTT AC 

Retrieve as FASTA