Entry information : AlyPrxIIA-1
Entry ID 7477
Creation 2010-08-10 (Christophe Dunand)
Last sequence changes 2010-08-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2012-05-10 (Christophe Dunand)
Peroxidase information: AlyPrxIIA-1
Name AlyPrxIIA-1
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII002]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrxIIA-1
start..stop
S start..stop
AlyPrxIIA-2 620 0 9..386 148..530
AtPrxII01 592 0 2..383 158..541
AlyPrxIIA-4 550 0 1..386 3..392
AlyPrxIIA-3 521 0 2..386 4..385
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 10591193..10592377 1185  
complement(join(10591193..10592377))


exon

Literature and cross-references AlyPrxIIA-1
DNA ref. Phytozome 11:   scaffold_2 (10592377..10591193)
Protein sequence: AlyPrxIIA-1
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   394
PWM (Da):   %s   45505.18  
PI (pH):   %s   8.27
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSMSNLPKDL VEEIISRVPL KCLRSIRLTC KKWNALFKSR SFTTMHIDKE EATSRELGQT QMIVMMDYNV YLMGMVLDEN PSKEFLGKLT CLDDTKQVKI SQVFHCEGLL LCILKDDDTK  IVVWNPYLGQ TRWIQTRMYD GASGWKGRKK YALGYENNSE NRSSCSPKIL RVIDNFNLFT KNTILVYEIY DFDSDLWTTL DVSPQWCIRS QRGLSLKGNT YWGAKERRAH GPIDHIICFD  FTRERFGPLL PLPFSAWGAR FASLSSVREE KITALFQKSE TYKFEIWITT TIEANNVTWS NFFTMDTLYL DQMLLYKSFF IDEEKKVAVV FEKEGKPICD IINIIGEDRC LMKLELGEPA 
DKNCWPLVCP YVPSVVQIKL HKGKNKAITK GIDK 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 2, no intron).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCGATGT CAAATCTTCC AAAGGATTTG GTAGAGGAGA TTATCTCAAG GGTTCCTTTG AAATGTTTGA GATCAATACG ATTAACTTGC AAAAAGTGGA ACGCTTTGTT CAAAAGCCGG  AGCTTTACGA CGATGCACAT TGACAAAGAA GAAGCAACAT CAAGGGAATT AGGGCAGACT CAGATGATCG TGATGATGGA TTACAATGTT TATTTAATGG GCATGGTCCT CGATGAAAAT  CCTTCCAAAG AGTTTCTAGG TAAACTTACT TGCCTAGATG ATACAAAACA AGTCAAGATA TCTCAAGTCT TTCATTGTGA GGGTTTATTG TTATGCATCT TGAAAGACGA TGATACTAAG  ATTGTGGTTT GGAATCCGTA TTTGGGGCAA ACAAGATGGA TCCAAACCAG AATGTATGAC GGCGCTAGTG GATGGAAAGG ACGAAAGAAG TACGCTCTCG GATACGAAAA TAATAGTGAA  AACAGATCTT CTTGTAGCCC CAAAATCTTG AGGGTTATAG ATAATTTCAA CCTTTTCACC AAAAACACCA TTTTAGTATA TGAAATCTAT GATTTTGATT CTGATTTATG GACTACTCTT  GATGTCTCTC CACAATGGTG TATAAGGTCT CAACGAGGCC TTTCTCTCAA GGGAAACACT TACTGGGGTG CTAAAGAACG GCGCGCACAC GGACCCATTG ATCATATAAT TTGTTTTGAT  TTTACAAGAG AGAGATTTGG ACCGCTTCTG CCTCTGCCAT TTAGTGCTTG GGGTGCACGG TTTGCGTCAC TATCTTCGGT TAGAGAAGAA AAGATCACTG CTTTATTTCA GAAAAGCGAA  ACATATAAAT TTGAGATATG GATTACGACT ACGATTGAGG CCAACAATGT GACGTGGAGC AATTTCTTCA CGATGGATAC ATTATACCTT GACCAAATGC TTTTATATAA GAGTTTCTTC  ATTGACGAGG AGAAGAAAGT TGCTGTGGTT TTTGAAAAAG AAGGAAAACC AATATGCGAC ATTATTAATA TCATTGGAGA GGATAGATGC TTAATGAAAT TGGAGCTTGG AGAACCCGCA 
GACAAAAACT GTTGGCCACT TGTGTGCCCT TATGTTCCAA GTGTGGTGCA AATCAAGCTA CATAAAGGAA AGAACAAAGC GATTACGAAA GGCATTGATA AATGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCGATGT CAAATCTTCC AAAGGATTTG GTAGAGGAGA TTATCTCAAG GGTTCCTTTG AAATGTTTGA GATCAATACG ATTAACTTGC AAAAAGTGGA ACGCTTTGTT CAAAAGCCGG  AGCTTTACGA CGATGCACAT TGACAAAGAA GAAGCAACAT CAAGGGAATT AGGGCAGACT CAGATGATCG TGATGATGGA TTACAATGTT TATTTAATGG GCATGGTCCT CGATGAAAAT  CCTTCCAAAG AGTTTCTAGG TAAACTTACT TGCCTAGATG ATACAAAACA AGTCAAGATA TCTCAAGTCT TTCATTGTGA GGGTTTATTG TTATGCATCT TGAAAGACGA TGATACTAAG  ATTGTGGTTT GGAATCCGTA TTTGGGGCAA ACAAGATGGA TCCAAACCAG AATGTATGAC GGCGCTAGTG GATGGAAAGG ACGAAAGAAG TACGCTCTCG GATACGAAAA TAATAGTGAA  AACAGATCTT CTTGTAGCCC CAAAATCTTG AGGGTTATAG ATAATTTCAA CCTTTTCACC AAAAACACCA TTTTAGTATA TGAAATCTAT GATTTTGATT CTGATTTATG GACTACTCTT  GATGTCTCTC CACAATGGTG TATAAGGTCT CAACGAGGCC TTTCTCTCAA GGGAAACACT TACTGGGGTG CTAAAGAACG GCGCGCACAC GGACCCATTG ATCATATAAT TTGTTTTGAT  TTTACAAGAG AGAGATTTGG ACCGCTTCTG CCTCTGCCAT TTAGTGCTTG GGGTGCACGG TTTGCGTCAC TATCTTCGGT TAGAGAAGAA AAGATCACTG CTTTATTTCA GAAAAGCGAA  ACATATAAAT TTGAGATATG GATTACGACT ACGATTGAGG CCAACAATGT GACGTGGAGC AATTTCTTCA CGATGGATAC ATTATACCTT GACCAAATGC TTTTATATAA GAGTTTCTTC  ATTGACGAGG AGAAGAAAGT TGCTGTGGTT TTTGAAAAAG AAGGAAAACC AATATGCGAC ATTATTAATA TCATTGGAGA GGATAGATGC TTAATGAAAT TGGAGCTTGG AGAACCCGCA 
GACAAAAACT GTTGGCCACT TGTGTGCCCT TATGTTCCAA GTGTGGTGCA AATCAAGCTA CATAAAGGAA AGAACAAAGC GATTACGAAA GGCATTGATA AATGA 

Retrieve as FASTA