Entry information : AlyPrx31
Entry ID 7490
Creation 2010-08-10 (Christophe Dunand)
Last sequence changes 2010-08-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyPrx31
Name AlyPrx31
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrx31
start..stop
S start..stop
AtPrx31 616 0 1..316 1..316
BstrPrx60 593 0 1..316 1..316
ThPrx31 572 0 16..316 23..323
TsPrx31 572 0 16..316 23..323
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 4380766..4381716 951  
join(4380766..4381716)


exon

Literature and cross-references AlyPrx31
DNA ref. Phytozome 11:   scaffold_5 (4380766..4381716)
Protein sequence: AlyPrx31
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   316 (297)
PWM (Da):   %s   35039.02 (32940.9)  
PI (pH):   %s   9.49 (9.35) Peptide Signal:   %s   cut: 20 range:20-316
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASLKSLSLL FLFFLTAQSR LTTNFYSKSC PRFLDIVRDT ITNKQITNPT TAAAVIRLFF HDCFPNGCDA SVLLSSTAFN TAERDSSINL SLPGDGFDVI VRAKTALELA CPNTVSCSDI  ISVATRDLLI TVGGPYYDVF LGRRDSRTSK SSLLTDLLPL PSTPISKIIQ QFESKGFNVQ EMVALSGAHS IGFSHCKEFV GRVGRNNTGY NPRFAVALKK ACVNYPKDPT ISVFNDIMTP 
NKFDNMYYQN LKKGLGLLES DHGLYSDPRT RTFVDLYAKN QDLFFKDFAK AMQKLSLYGI KTGRRGEIRR RCDAIN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, no intron)
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCAC TCAAATCTCT CTCCCTCCTC TTCCTCTTCT TCCTCACAGC TCAATCTCGC TTAACCACAA ACTTCTACTC AAAGTCATGC CCAAGATTCC TCGACATAGT CCGTGACACA  ATCACAAACA AACAAATCAC AAATCCAACC ACCGCAGCCG CCGTTATCCG TCTCTTCTTC CACGACTGTT TCCCTAACGG CTGCGACGCC TCCGTCCTCC TCTCTTCCAC CGCCTTCAAC  ACCGCAGAAC GTGACTCCTC CATCAACCTC TCACTCCCTG GAGATGGCTT CGACGTCATT GTCCGAGCCA AAACAGCTCT CGAACTCGCT TGTCCCAACA CAGTTTCTTG TTCCGACATA  ATCTCTGTCG CAACACGTGA TCTTTTGATC ACCGTCGGTG GTCCTTACTA CGACGTTTTC CTCGGCCGTC GTGATTCAAG AACGTCGAAA TCTTCTCTTT TAACCGATCT TCTTCCTCTT  CCTTCTACAC CAATCTCTAA AATCATTCAA CAGTTTGAAT CTAAAGGTTT CAATGTTCAA GAAATGGTTG CTCTTAGTGG AGCACATTCT ATAGGGTTTT CACATTGTAA AGAGTTTGTG  GGTCGGGTGG GTCGGAATAA TACCGGGTAT AACCCGAGAT TCGCCGTGGC TTTAAAGAAA GCTTGTGTTA ATTACCCTAA AGATCCGACT ATTTCTGTGT TTAATGATAT TATGACTCCT  AATAAGTTTG ATAATATGTA TTATCAGAAT CTTAAAAAGG GTCTTGGGTT ACTTGAATCG GATCATGGGT TATATTCTGA CCCGAGAACC CGAACTTTTG TTGATCTTTA TGCTAAGAAT 
CAAGATCTAT TTTTCAAAGA TTTTGCTAAA GCTATGCAGA AGTTGAGTCT TTATGGTATA AAGACTGGTA GAAGAGGAGA GATCCGAAGA AGGTGCGATG CTATTAATTG A 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCAC TCAAATCTCT CTCCCTCCTC TTCCTCTTCT TCCTCACAGC TCAATCTCGC TTAACCACAA ACTTCTACTC AAAGTCATGC CCAAGATTCC TCGACATAGT CCGTGACACA  ATCACAAACA AACAAATCAC AAATCCAACC ACCGCAGCCG CCGTTATCCG TCTCTTCTTC CACGACTGTT TCCCTAACGG CTGCGACGCC TCCGTCCTCC TCTCTTCCAC CGCCTTCAAC  ACCGCAGAAC GTGACTCCTC CATCAACCTC TCACTCCCTG GAGATGGCTT CGACGTCATT GTCCGAGCCA AAACAGCTCT CGAACTCGCT TGTCCCAACA CAGTTTCTTG TTCCGACATA  ATCTCTGTCG CAACACGTGA TCTTTTGATC ACCGTCGGTG GTCCTTACTA CGACGTTTTC CTCGGCCGTC GTGATTCAAG AACGTCGAAA TCTTCTCTTT TAACCGATCT TCTTCCTCTT  CCTTCTACAC CAATCTCTAA AATCATTCAA CAGTTTGAAT CTAAAGGTTT CAATGTTCAA GAAATGGTTG CTCTTAGTGG AGCACATTCT ATAGGGTTTT CACATTGTAA AGAGTTTGTG  GGTCGGGTGG GTCGGAATAA TACCGGGTAT AACCCGAGAT TCGCCGTGGC TTTAAAGAAA GCTTGTGTTA ATTACCCTAA AGATCCGACT ATTTCTGTGT TTAATGATAT TATGACTCCT  AATAAGTTTG ATAATATGTA TTATCAGAAT CTTAAAAAGG GTCTTGGGTT ACTTGAATCG GATCATGGGT TATATTCTGA CCCGAGAACC CGAACTTTTG TTGATCTTTA TGCTAAGAAT 
CAAGATCTAT TTTTCAAAGA TTTTGCTAAA GCTATGCAGA AGTTGAGTCT TTATGGTATA AAGACTGGTA GAAGAGGAGA GATCCGAAGA AGGTGCGATG CTATTAATTG A 

Retrieve as FASTA