Entry information : AlyPrx41
Entry ID 7498
Creation 2010-08-10 (Christophe Dunand)
Last sequence changes 2010-08-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyPrx41
Name AlyPrx41
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrx41
start..stop
S start..stop
AhalPrx46 662 0 1..326 1..326
AtPrx41 627 0 16..326 16..326
BstrPrx07 625 0 1..326 1..326
CagraPrx70 619 0 1..326 1..326
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11346021..11347001 981  
complement(join(11346021..11347001))


exon

Literature and cross-references AlyPrx41
DNA ref. Phytozome 12:   scaffold_7 (11347001..11346021)
Protein sequence: AlyPrx41
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326 (306)
PWM (Da):   %s   36033.36 (33801.1)  
PI (pH):   %s   7.99 (8.00) Peptide Signal:   %s   cut: 21 range:21-326
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSLYIPVLFL VLVFVPSINS APPPNLTKDY YQKTCPDFSK IVRETVTPKQ GQQPTTAAGT LRLFFHDCFM EGCDASVLIA TNSFNKAERD DDLNESLPGD AFDIVTRIKT ALELSCPGVV  SCADILAQAT RDLVTMVGGP FYEVKLGRKD GFESKAHKVK GNLPLANQSV PDMLSIFKKN GFTLKELVAL SGGHTIGFSH CKEFSNRIFP KVDPELNPKF AGVLKDLCKN FETNKTMAAF 
LDPVTPGKFD NMYFKNLKRG LGLLASDHIL FKDSSTRPFV ELYANNQTAF FEDFARAMEK LGTVGVKGEK DGEVRRRCDH FNNLNV 

Retrieve as FASTA  
Remarks complete sequence from genomic (chromo 7, no intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCTTTGT ATATTCCCGT TCTCTTCCTA GTCCTAGTCT TTGTCCCGTC TATAAATTCG GCACCACCGC CAAATTTAAC AAAAGATTAT TACCAAAAAA CATGTCCCGA TTTCAGTAAA  ATCGTACGTG AAACAGTTAC ACCAAAGCAA GGCCAGCAGC CAACGACAGC TGCTGGAACA CTCCGTCTCT TTTTCCATGA TTGTTTCATG GAAGGATGTG ATGCTTCCGT CCTTATCGCT  ACAAATTCTT TCAACAAAGC CGAACGCGAC GATGATCTCA ACGAGTCTCT TCCGGGAGAT GCATTCGACA TTGTGACTCG CATCAAAACC GCTCTTGAAT TGTCTTGTCC CGGGGTGGTG  TCTTGCGCAG ACATCCTGGC TCAAGCCACA CGTGACCTTG TCACAATGGT TGGTGGGCCT TTCTATGAAG TCAAATTGGG CCGTAAAGAT GGTTTTGAGT CGAAAGCTCA TAAAGTCAAA  GGAAATTTAC CTTTAGCGAA CCAATCTGTC CCTGACATGT TATCGATATT CAAGAAGAAT GGTTTCACTC TAAAGGAGCT GGTTGCGTTA AGTGGCGGGC ACACAATCGG ATTCTCACAC  TGCAAAGAAT TCAGCAACCG GATATTCCCG AAGGTTGATC CAGAACTCAA CCCGAAATTC GCAGGCGTTC TTAAAGATCT ATGCAAGAAT TTCGAGACCA ATAAGACGAT GGCAGCGTTT  CTCGATCCGG TGACACCAGG AAAATTCGAT AATATGTATT TCAAGAACTT GAAACGAGGT CTTGGATTGT TAGCTTCCGA CCATATCTTG TTTAAAGACA GTAGCACGAG ACCGTTTGTG  GAATTATATG CGAATAATCA GACGGCTTTC TTCGAAGATT TTGCACGGGC TATGGAGAAA CTAGGCACGG TTGGTGTTAA AGGCGAAAAA GATGGAGAGG TAAGACGTAG ATGTGATCAC 
TTCAACAACC TTAACGTATA G 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCTTTGT ATATTCCCGT TCTCTTCCTA GTCCTAGTCT TTGTCCCGTC TATAAATTCG GCACCACCGC CAAATTTAAC AAAAGATTAT TACCAAAAAA CATGTCCCGA TTTCAGTAAA  ATCGTACGTG AAACAGTTAC ACCAAAGCAA GGCCAGCAGC CAACGACAGC TGCTGGAACA CTCCGTCTCT TTTTCCATGA TTGTTTCATG GAAGGATGTG ATGCTTCCGT CCTTATCGCT  ACAAATTCTT TCAACAAAGC CGAACGCGAC GATGATCTCA ACGAGTCTCT TCCGGGAGAT GCATTCGACA TTGTGACTCG CATCAAAACC GCTCTTGAAT TGTCTTGTCC CGGGGTGGTG  TCTTGCGCAG ACATCCTGGC TCAAGCCACA CGTGACCTTG TCACAATGGT TGGTGGGCCT TTCTATGAAG TCAAATTGGG CCGTAAAGAT GGTTTTGAGT CGAAAGCTCA TAAAGTCAAA  GGAAATTTAC CTTTAGCGAA CCAATCTGTC CCTGACATGT TATCGATATT CAAGAAGAAT GGTTTCACTC TAAAGGAGCT GGTTGCGTTA AGTGGCGGGC ACACAATCGG ATTCTCACAC  TGCAAAGAAT TCAGCAACCG GATATTCCCG AAGGTTGATC CAGAACTCAA CCCGAAATTC GCAGGCGTTC TTAAAGATCT ATGCAAGAAT TTCGAGACCA ATAAGACGAT GGCAGCGTTT  CTCGATCCGG TGACACCAGG AAAATTCGAT AATATGTATT TCAAGAACTT GAAACGAGGT CTTGGATTGT TAGCTTCCGA CCATATCTTG TTTAAAGACA GTAGCACGAG ACCGTTTGTG  GAATTATATG CGAATAATCA GACGGCTTTC TTCGAAGATT TTGCACGGGC TATGGAGAAA CTAGGCACGG TTGGTGTTAA AGGCGAAAAA GATGGAGAGG TAAGACGTAG ATGTGATCAC 
TTCAACAACC TTAACGTATA G 

Retrieve as FASTA