Entry information : AlyPrx65
Entry ID 7503
Creation 2010-08-10 (Christophe Dunand)
Last sequence changes 2010-08-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyPrx65
Name AlyPrx65
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrx65
start..stop
S start..stop
AhalPrx06 681 0 1..334 1..334
AtPrx65 675 0 1..334 1..334
CagraPrx45 641 0 1..334 1..330
CrubPrx113 640 0 1..334 1..330
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 608211..609215 1005  
join(608211..609215)


exon

Literature and cross-references AlyPrx65
DNA ref. Phytozome 12:   scaffold_8 (608211..609215)
Protein sequence: AlyPrx65
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   334 (306)
PWM (Da):   %s   36898.56 (33799.0) Transmb domain:   %s   i13-32o
PI (pH):   %s   7.17 (6.92) Peptide Signal:   %s   cut: 29 range:29-334
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSNMQFSRSF NPFVLLFCLA VVVPTISADV AILRTDYYQK TCPDFNKIVR EAVTTKQVQQ PTTAAGTLRL FFHDCFLEGC DASVLIATNS FNKAERDDDL NDSLPGDAFD IVTRIKTALE  LSCPGVVSCA DILAQATRDL VTMVGGPYFD VKLGRKDGFE SKAHKVRGNV PMANQTVPDI HGIFKKNGFT LREMVALSGA HTIGFSHCKE FADRLYGSKA DKEINPRFAA ALKDLCKNHT 
VDDTIAAFND VMTPGKFDNM YFKNLKRGLG LLASDHILIK DNSTKPFVDL YATNETAFFE DFARAMEKLG TVGVKGDKEG EVRRRCDHFN NLNV 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, no intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCGAATA TGCAATTCTC TCGTAGTTTT AATCCCTTTG TTCTCCTCTT CTGTCTCGCC GTTGTTGTAC CAACTATATC GGCTGATGTC GCTATCTTGA GAACGGACTA TTACCAAAAA  ACATGTCCTG ATTTCAACAA AATCGTGCGT GAAGCCGTTA CAACCAAACA AGTTCAACAA CCAACAACTG CGGCCGGGAC ACTCCGTCTC TTTTTCCACG ATTGTTTCCT TGAAGGTTGT  GATGCATCCG TCTTGATCGC GACCAACTCG TTTAACAAAG CGGAACGTGA TGATGATCTC AATGATTCCC TCCCGGGAGA TGCTTTTGAC ATCGTCACTC GCATCAAGAC AGCTCTCGAG  CTGTCTTGTC CTGGTGTAGT GTCTTGCGCA GATATCCTAG CGCAGGCTAC ACGTGACCTT GTCACAATGG TAGGAGGACC TTACTTTGAC GTAAAGCTTG GTCGTAAAGA CGGATTCGAA  TCCAAAGCCC ATAAAGTCCG AGGAAACGTC CCAATGGCAA ACCAGACCGT TCCCGACATC CACGGGATAT TCAAGAAAAA CGGGTTCACT CTTCGCGAGA TGGTAGCATT AAGCGGCGCT  CACACCATTG GATTCTCTCA CTGCAAAGAG TTTGCCGACA GGCTTTACGG ATCCAAAGCT GATAAAGAAA TCAACCCGCG ATTTGCAGCT GCTCTCAAAG ATCTTTGCAA AAACCACACC  GTGGATGACA CAATCGCGGC GTTTAATGAC GTGATGACTC CGGGAAAATT CGACAACATG TACTTCAAGA ACCTAAAGCG AGGGCTAGGG CTTCTAGCTT CCGACCATAT CCTTATTAAA  GACAACAGCA CCAAGCCGTT TGTGGATCTA TACGCAACTA ACGAGACAGC ATTCTTTGAG GATTTCGCTC GTGCGATGGA GAAACTTGGC ACGGTCGGTG TCAAGGGCGA TAAAGAAGGA 
GAAGTGAGAC GTAGGTGCGA CCACTTCAAT AATCTCAACG TTTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCGAATA TGCAATTCTC TCGTAGTTTT AATCCCTTTG TTCTCCTCTT CTGTCTCGCC GTTGTTGTAC CAACTATATC GGCTGATGTC GCTATCTTGA GAACGGACTA TTACCAAAAA  ACATGTCCTG ATTTCAACAA AATCGTGCGT GAAGCCGTTA CAACCAAACA AGTTCAACAA CCAACAACTG CGGCCGGGAC ACTCCGTCTC TTTTTCCACG ATTGTTTCCT TGAAGGTTGT  GATGCATCCG TCTTGATCGC GACCAACTCG TTTAACAAAG CGGAACGTGA TGATGATCTC AATGATTCCC TCCCGGGAGA TGCTTTTGAC ATCGTCACTC GCATCAAGAC AGCTCTCGAG  CTGTCTTGTC CTGGTGTAGT GTCTTGCGCA GATATCCTAG CGCAGGCTAC ACGTGACCTT GTCACAATGG TAGGAGGACC TTACTTTGAC GTAAAGCTTG GTCGTAAAGA CGGATTCGAA  TCCAAAGCCC ATAAAGTCCG AGGAAACGTC CCAATGGCAA ACCAGACCGT TCCCGACATC CACGGGATAT TCAAGAAAAA CGGGTTCACT CTTCGCGAGA TGGTAGCATT AAGCGGCGCT  CACACCATTG GATTCTCTCA CTGCAAAGAG TTTGCCGACA GGCTTTACGG ATCCAAAGCT GATAAAGAAA TCAACCCGCG ATTTGCAGCT GCTCTCAAAG ATCTTTGCAA AAACCACACC  GTGGATGACA CAATCGCGGC GTTTAATGAC GTGATGACTC CGGGAAAATT CGACAACATG TACTTCAAGA ACCTAAAGCG AGGGCTAGGG CTTCTAGCTT CCGACCATAT CCTTATTAAA  GACAACAGCA CCAAGCCGTT TGTGGATCTA TACGCAACTA ACGAGACAGC ATTCTTTGAG GATTTCGCTC GTGCGATGGA GAAACTTGGC ACGGTCGGTG TCAAGGGCGA TAAAGAAGGA 
GAAGTGAGAC GTAGGTGCGA CCACTTCAAT AATCTCAACG TTTAA 

Retrieve as FASTA