Entry information : AlyPrx06
Entry ID 7532
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyPrx06
Name AlyPrx06
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrx06
start..stop
S start..stop
AhalPrx53 671 0 1..326 1..326
AtPrx06 660 0 1..326 1..326
BstrPrx79 650 0 1..326 1..326
TsPrx06 608 0 1..326 1..328
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 10662750..10663730 981  
join(10662750..10663730)


exon

Literature and cross-references AlyPrx06
DNA ref. Phytozome 12:   scaffold_1 (10662750..10663730)
Protein sequence: AlyPrx06
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326 (306)
PWM (Da):   %s   36213.03 (33987.8)  
PI (pH):   %s   6.85 (6.62) Peptide Signal:   %s   cut: 21 range:21-326
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKSFGLCLFI LLSSPYILQA NLSSDYYTKT CPEFEQTLVQ IVTDKQIAAP TTAAGTLRLF FHDCMVDGCD ASILVASTPR KTSERDADIN HSLPGDAFDV ITRIKTAVEL KCPNVVSCSD  ILVGATRSLV TMVGGPRINV KFGRKDSLVS DMNRVEGKLA RPNMTMDHII SIFESSGLTV QEMVALVGAH TIGFSHCKEF ASRIFNKSDQ NGPVEMNPKY AAELRKLCAN YTKDEEMSAF 
NDVFTPGKFD NMYYKNLKHG YGLLQSDHAI AFDNRTRSLV DLYAENETAF FDAFAKAMEK VSEKNVKTGK LGEVRRRCDQ YNDYKG 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, no intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAATCTT TTGGTTTATG TCTGTTTATT CTCCTATCTT CTCCATATAT CCTTCAAGCC AATCTCTCGT CTGATTATTA CACCAAAACA TGTCCTGAAT TCGAGCAAAC ACTCGTCCAA  ATCGTCACCG ATAAACAAAT CGCAGCTCCA ACAACAGCCG CAGGAACACT CCGTCTCTTT TTCCACGATT GCATGGTCGA TGGCTGTGAC GCCTCAATCC TCGTTGCTTC TACTCCACGT  AAAACCTCTG AACGTGACGC AGATATCAAC CATTCTCTAC CTGGAGACGC ATTCGACGTA ATCACACGTA TCAAAACCGC CGTAGAACTC AAATGTCCCA ACGTCGTTTC TTGCTCTGAC  ATTCTCGTTG GTGCAACACG TAGCTTGGTC ACAATGGTCG GAGGTCCGAG AATTAACGTT AAGTTCGGTC GGAAAGATAG TCTTGTCTCT GATATGAACC GTGTTGAAGG AAAGCTAGCT  CGACCTAACA TGACTATGGA TCATATCATT TCGATTTTTG AATCTAGTGG TCTGACAGTT CAAGAAATGG TTGCTCTTGT TGGTGCTCAC ACGATTGGTT TCTCTCATTG CAAAGAGTTT  GCGAGTCGGA TCTTTAACAA GTCCGATCAA AACGGTCCGG TGGAGATGAA TCCGAAATAC GCTGCGGAGC TGAGGAAGCT GTGTGCGAAT TACACCAAGG ACGAAGAGAT GTCTGCGTTT  AATGATGTTT TTACCCCTGG AAAATTTGAC AACATGTACT ACAAGAATTT GAAGCATGGT TACGGGTTGC TCCAGTCGGA TCACGCGATT GCGTTTGATA ACAGGACGCG GTCGCTGGTG  GATCTTTACG CAGAGAACGA AACGGCGTTC TTTGACGCGT TTGCCAAGGC CATGGAGAAA GTTAGTGAGA AGAATGTGAA GACGGGGAAG CTTGGAGAAG TAAGAAGACG GTGTGATCAA 
TACAATGACT ACAAGGGGTA A 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAATCTT TTGGTTTATG TCTGTTTATT CTCCTATCTT CTCCATATAT CCTTCAAGCC AATCTCTCGT CTGATTATTA CACCAAAACA TGTCCTGAAT TCGAGCAAAC ACTCGTCCAA  ATCGTCACCG ATAAACAAAT CGCAGCTCCA ACAACAGCCG CAGGAACACT CCGTCTCTTT TTCCACGATT GCATGGTCGA TGGCTGTGAC GCCTCAATCC TCGTTGCTTC TACTCCACGT  AAAACCTCTG AACGTGACGC AGATATCAAC CATTCTCTAC CTGGAGACGC ATTCGACGTA ATCACACGTA TCAAAACCGC CGTAGAACTC AAATGTCCCA ACGTCGTTTC TTGCTCTGAC  ATTCTCGTTG GTGCAACACG TAGCTTGGTC ACAATGGTCG GAGGTCCGAG AATTAACGTT AAGTTCGGTC GGAAAGATAG TCTTGTCTCT GATATGAACC GTGTTGAAGG AAAGCTAGCT  CGACCTAACA TGACTATGGA TCATATCATT TCGATTTTTG AATCTAGTGG TCTGACAGTT CAAGAAATGG TTGCTCTTGT TGGTGCTCAC ACGATTGGTT TCTCTCATTG CAAAGAGTTT  GCGAGTCGGA TCTTTAACAA GTCCGATCAA AACGGTCCGG TGGAGATGAA TCCGAAATAC GCTGCGGAGC TGAGGAAGCT GTGTGCGAAT TACACCAAGG ACGAAGAGAT GTCTGCGTTT  AATGATGTTT TTACCCCTGG AAAATTTGAC AACATGTACT ACAAGAATTT GAAGCATGGT TACGGGTTGC TCCAGTCGGA TCACGCGATT GCGTTTGATA ACAGGACGCG GTCGCTGGTG  GATCTTTACG CAGAGAACGA AACGGCGTTC TTTGACGCGT TTGCCAAGGC CATGGAGAAA GTTAGTGAGA AGAATGTGAA GACGGGGAAG CTTGGAGAAG TAAGAAGACG GTGTGATCAA 
TACAATGACT ACAAGGGGTA A 

Retrieve as FASTA