Entry information : AlyPrx56-1
Entry ID 7533
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyPrx56-1
Name AlyPrx56-1
Class Class III peroxidase    [Orthogroup: Prx044]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrx56-1
start..stop
S start..stop
AhalPrx41 667 0 1..329 1..327
BstrPrx35 635 0 1..329 1..329
AtPrx56 632 0 1..329 1..329
CrubPrx46 605 0 1..329 1..330
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 6180237..6180467 231 N° 2 6180553..6180738 186 N° 3 6181143..6181308 166 N° 4 6181579..6181985 407
join(6180237..6180467,6180553..6180738,6181143..6181308,6181579..6181985)


exon

Literature and cross-references AlyPrx56-1
DNA ref. Phytozome 12:   scaffold_6 (6180237..6181985)
Protein sequence: AlyPrx56-1
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   329 (298)
PWM (Da):   %s   36232.6 (32853.9) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.69 (8.73) Peptide Signal:   %s   cut: 32 range:32-329
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTALKMTISCFFFLQVISCLLSSFAPTNVQGLQVGFYDKACPKAELIVKKSVFEAINKDPTLGAPLLRMFFHDCFVRGCEGSLLLELKNKKDEKNAIPNLTLRGFEIIDNAKAALEKECPGIVSCSDVLALVARDAMLALNGPSWEVETGRRDGLVTNITEVLLNLPSPFNNISSLITQFQSKGLDKKDLVVLSGGHTIGHGHCPQITNRLYNFTGKGDSDPNLDTKYAANLRRKCKPTDTTTALEMDPGSFKTFDESYFKLVSQRRGLFQSDAALLDNQETKSYLLKHMNSDKSTFFKDFGVSMVKMGRIGVLTGQAGEVRKKCRMVN

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 6, 3 introns).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACTGCTTTGAAGATGACTATCTCTTGTTTCTTTTTCCTTCAAGTAATATCGTGCTTGCTCTCTTCATTTGCCCCAACAAATGTGCAAGGATTGCAAGTTGGGTTCTACGACAAGGCA
TGCCCGAAAGCTGAGCTTATTGTCAAGAAGTCTGTCTTCGAGGCAATTAACAAGGATCCAACACTTGGAGCTCCTTTGCTCAGAATGTTCTTCCACGATTGCTTCGTTCGG
GTAATGTCC
TTTCTTGACATCCTGAATTTCCATTTCGTTTTTTTAGACGCTTTAGCGAACTAATGATTATATCATGATGTTTTAGGGATGCGAAGGCTCGCTCTTGCTAGAGCTAAAGAACAAAAAAGA
TGAGAAAAACGCAATTCCTAACCTCACCCTTCGAGGATTTGAGATCATAGACAATGCCAAGGCAGCTCTAGAAAAGGAGTGTCCGGGCATTGTTTCTTGCTCTGATGTATTGGCTCTTGT
CGCTAGAGATGCAATGCTTGCA
GTAAGTATACATTTTTACTATCAAGTTAGTGATCTAATATTTGGTCAGAGCTCACGGTATCTTCATCATTTTTTTGATAAAGTGCTCACGGTATCTTT
ATTACACGGTCCTTTTTTATATTACTACAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTAACTACAAAGTTCACATGGCGATTATAGACTCCATAAATTAGGTTGG
ACGTATTCTTCTGCTTTTATAATGCTACAAAATGCAGTTGACTTAAAATCTCAAGAGGCTATATAGTTCAGGTTTCCATCTGAGATTTTCTAACTGCTATTAAGAAAATATAATCCATAA
AATCTTTTATGAATGATATGTTGGATTTTTAACATCATGTATTTTATGATATACAAATCAATATAGCTCAATGGACCGTCGTGGGAGGTTGAAACGGGAAGAAGAGACGGTCTGGTTACA
AACATCACTGAGGTCTTATTAAACTTACCATCACCATTTAATAATATCAGTAGCCTTATCACTCAATTCCAGTCCAAAGGCCTCGACAAGAAAGACCTCGTTGTGCTTTCAG
GTGTGTTA
TAGAATCAGAAAATTCTTTAAATTATACTTGAACGATGCATCAAATAATGAAAGTGCAGTGTTCTTTGAACAAATATTTTTCTCTTTTTTTCCAAACATTGTTTGGCTATTTTGGACTCT
TTATATAGCAGATTAGCAGCAAATAAGAATACTCGTTCTTCTACATATCTTCTATATTATTCTCTAGCTTGGGATCTCCAGTTATCTAATAATAAAAATAAAATCATTCTCAACTTATTT
GTATATATTTACATTTTGATAGGTGGGCACACAATTGGGCACGGACATTGTCCTCAAATCACGAACCGGCTCTACAATTTCACCGGCAAAGGAGATAGTGATCCGAACTTAGACACGAAA
TACGCAGCCAACCTCAGAAGAAAATGCAAGCCAACTGATACCACGACGGCTCTAGAAATGGATCCAGGAAGCTTCAAAACGTTTGATGAAAGCTACTTCAAGCTTGTGTCTCAAAGAAGA
GGGTTGTTTCAATCTGACGCAGCTCTTTTAGACAATCAAGAAACTAAGTCTTATCTTCTAAAGCACATGAATAGTGATAAGTCTACTTTCTTTAAAGATTTTGGTGTCTCTATGGTAAAG
ATGGGTCGGATTGGAGTTTTAACGGGTCAGGCTGGGGAAGTTCGCAAGAAGTGCAGAATGGTTAATTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACTGCTTTGAAGATGACTATCTCTTGTTTCTTTTTCCTTCAAGTAATATCGTGCTTGCTCTCTTCATTTGCCCCAACAAATGTGCAAGGATTGCAAGTTGGGTTCTACGACAAGGCA
TGCCCGAAAGCTGAGCTTATTGTCAAGAAGTCTGTCTTCGAGGCAATTAACAAGGATCCAACACTTGGAGCTCCTTTGCTCAGAATGTTCTTCCACGATTGCTTCGTTCGG
GGATGCGAA
GGCTCGCTCTTGCTAGAGCTAAAGAACAAAAAAGATGAGAAAAACGCAATTCCTAACCTCACCCTTCGAGGATTTGAGATCATAGACAATGCCAAGGCAGCTCTAGAAAAGGAGTGTCCG
GGCATTGTTTCTTGCTCTGATGTATTGGCTCTTGTCGCTAGAGATGCAATGCTTGCA
CTCAATGGACCGTCGTGGGAGGTTGAAACGGGAAGAAGAGACGGTCTGGTTACAAACATCACT
GAGGTCTTATTAAACTTACCATCACCATTTAATAATATCAGTAGCCTTATCACTCAATTCCAGTCCAAAGGCCTCGACAAGAAAGACCTCGTTGTGCTTTCAG
GTGGGCACACAATTGGG
CACGGACATTGTCCTCAAATCACGAACCGGCTCTACAATTTCACCGGCAAAGGAGATAGTGATCCGAACTTAGACACGAAATACGCAGCCAACCTCAGAAGAAAATGCAAGCCAACTGAT
ACCACGACGGCTCTAGAAATGGATCCAGGAAGCTTCAAAACGTTTGATGAAAGCTACTTCAAGCTTGTGTCTCAAAGAAGAGGGTTGTTTCAATCTGACGCAGCTCTTTTAGACAATCAA
GAAACTAAGTCTTATCTTCTAAAGCACATGAATAGTGATAAGTCTACTTTCTTTAAAGATTTTGGTGTCTCTATGGTAAAGATGGGTCGGATTGGAGTTTTAACGGGTCAGGCTGGGGAA
GTTCGCAAGAAGTGCAGAATGGTTAATTAA

Retrieve as FASTA