Entry information : AlyPrx34-2
Entry ID 7565
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyPrx34-2
Name AlyPrx34-2
Class Class III peroxidase    [Orthogroup: Prx035]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrx34-2
start..stop
S start..stop
AhalPrx51 721 0 1..355 1..355
BstrPrx03 671 0 6..355 4..353
AruPrx01-1 654 0 6..355 4..353
AtPrx34 652 0 14..355 12..353
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 13086929..13087165 237 N° 2 13086399..13086590 192 N° 3 13085543..13085711 169 N° 4 13084976..13085445 470
complement(join(13084976..13085445,13085543..13085711,13086399..13086590,1308692 9..13087165))


exon

Literature and cross-references AlyPrx34-2
DNA ref. Phytozome 12:   scaffold_6 (13087165..13084976)
Protein sequence: AlyPrx34-2
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   355 (323)
PWM (Da):   %s   38778.48 (35410.8)  
PI (pH):   %s   8.14 (8.21) Peptide Signal:   %s   cut: 33 range:33-355
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MKFSASSSSTSLTWTTLITLGCLMLYASLSDAQLTPTFYDNSCPNVTNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAIETACPRTVSCADMLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLQLANANLPGPSSTLPQLKDRFKNVGLNRPSDLVALSGGHTFGKNQCRFIMNRLYNFSNTGLPDPSLNTTYLQTLRGLCPRNGNLSALVDFDLRTPTVFDNKYYVNLGERKGLIQSDQELFSSPNATDTIPLVRSYANSTQTFFNAFVEAMNRMGNITPLTGTQGQIRLNCRVVNSNSLLHDVVDIVDFVSSM

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 6, 3 introns).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGTTCTCTGCTTCTTCTTCTTCTACTTCACTCACTTGGACAACCTTAATCACATTGGGATGTCTTATGCTATATGCCTCTTTGTCCGATGCTCAACTTACCCCTACCTTCTACGAC
AATTCATGTCCTAATGTTACTAACATCGTACGAGATACCATTGTCAACGAGTTAAGGTCAGACCCTCGTATCGCCGCGAGCATCCTCCGTCTTCATTTCCACGACTGCTTTGTAAAT
GTA
AGATATTACTTTTTATCACGTTGCTAATTATTGTATGTAACTATGTATCATATTAGTGATTTTTTCATGTTTATTTATTCATATTATTTTATTGCATTTATTATTTGAATTTGATTATAT
AACCATTTTAATGAGATTATATATAAAACATTTCAATAGTCTAGTTTATTCAAGATATTTTATCTTTATTGCCTAAAGTATATATGGTTTTTATGGATTACAAAAAAAGAAAATTGATGT
TACATCGTTACTGGTAGTAAAGATTCAACTATATATTTGAGGATGTAATACACTGACTAACAATTTGGTTAATTTTTTTTTTGGACTTTTGAAAGGGTTGTGACGCATCGATCTTGTTAG
ACAACACGACATCATTTCGAACAGAGAAAGATGCATTTGGAAACGCAAATTCGGCTCGGGGATTTCCCGTGATTGATAGAATGAAAGCCGCAATAGAGACGGCTTGCCCAAGAACCGTTT
CATGCGCAGATATGCTCACCATCGCGGCTCAACAATCTGTTACTTTG
GTATTTGCTACACTTTATCATTCATTTATTCATTACTGTATATAATAATGATATAGTTACTTAACAAATTAAA
CACGACCTAAGTTTGTTTGGGAAGTCTGTCAGTTGGGCCAAGGCCCAACTGGTTTACCTGGTAGCCAGAAATGCAGGCGGCCTGACTACCCCCTGGCACTTAGTCGGAAGGCATTCCAAA
CTCGGGATAGGCAGAGTGGTAGCCCGTAAGGGCCTAACCGTTAACACGGTGGACTAGTCCACTATGTAGCACCTCGGTGCGTTCCTACCGGGGCCGACCGGATAGCCGATAGGGTTTGAA
AATAAGATATATATTTTTGTTTGTTTGAGAAGGTCGCACTCCATATCCATATTAATTAGTATCACAATCAACCTTTCAACCTTATGACCAAGAATTCAAAATTATTAGGGAAATATTCAA
AACGCGTGGTCCCGTAAAGAAATTTTGATAGGTTTACTATTATTGGAAACAAACAAGTAGATCTCATCACAATAATGTAATTGGTAAGACTACGTTTTACGTTAACCAAGAATATTTAAT
TATATCTTCATATTTTTCAAGAAAATATTGGAGATTAAAAAAAACTTCCTTAGCTTTGACTATAAATCATCTATGAATTTATATAACATGTTTTTTTCCTCTTTCCTTATTGGAATTTCT
GAATGATATCATAGGCGGGAGGTCCTTCTTGGAGAGTTCCTTTGGGAAGAAGAGACAGCTTACAAGCATTTTTGCAACTCGCTAATGCAAATCTTCCTGGTCCATCCTCCACACTTCCAC
AACTTAAAGATAGATTTAAAAATGTTGGCCTCAACCGTCCTTCTGATCTCGTAGCTCTTTCCG
GTAATTAACAAAAGGATATTACACACCATTTGATATAGTTGTAATCAGCTGAGTTTT
TTATTTATTGATATTGATCTTATGGTCTTTCTTTTGTTAGGTGGCCACACATTTGGTAAAAACCAGTGCCGGTTTATTATGAACAGACTATACAACTTCAGCAACACCGGTTTACCCGAC
CCTTCTCTCAACACTACTTACCTACAAACTCTCCGCGGATTATGTCCCCGTAATGGTAATCTAAGTGCCTTGGTGGATTTTGATCTACGTACACCTACGGTTTTTGACAACAAATACTAT
GTGAACCTTGGTGAGCGGAAAGGTCTTATCCAGAGCGACCAAGAATTGTTCTCTAGCCCCAATGCCACGGACACAATCCCTTTGGTGAGATCATATGCTAATAGCACACAAACCTTCTTC
AATGCGTTTGTGGAGGCAATGAATAGGATGGGAAATATCACACCTCTCACAGGAACTCAAGGACAAATCAGGTTGAATTGTAGGGTGGTGAATTCCAACTCTCTACTCCATGATGTGGTT
GATATTGTTGACTTTGTTAGCTCTATGTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAAGTTCTCTGCTTCTTCTTCTTCTACTTCACTCACTTGGACAACCTTAATCACATTGGGATGTCTTATGCTATATGCCTCTTTGTCCGATGCTCAACTTACCCCTACCTTCTACGAC
AATTCATGTCCTAATGTTACTAACATCGTACGAGATACCATTGTCAACGAGTTAAGGTCAGACCCTCGTATCGCCGCGAGCATCCTCCGTCTTCATTTCCACGACTGCTTTGTAAAT
GGT
TGTGACGCATCGATCTTGTTAGACAACACGACATCATTTCGAACAGAGAAAGATGCATTTGGAAACGCAAATTCGGCTCGGGGATTTCCCGTGATTGATAGAATGAAAGCCGCAATAGAG
ACGGCTTGCCCAAGAACCGTTTCATGCGCAGATATGCTCACCATCGCGGCTCAACAATCTGTTACTTTG
GCGGGAGGTCCTTCTTGGAGAGTTCCTTTGGGAAGAAGAGACAGCTTACAA
GCATTTTTGCAACTCGCTAATGCAAATCTTCCTGGTCCATCCTCCACACTTCCACAACTTAAAGATAGATTTAAAAATGTTGGCCTCAACCGTCCTTCTGATCTCGTAGCTCTTTCCG
GT
GGCCACACATTTGGTAAAAACCAGTGCCGGTTTATTATGAACAGACTATACAACTTCAGCAACACCGGTTTACCCGACCCTTCTCTCAACACTACTTACCTACAAACTCTCCGCGGATTA
TGTCCCCGTAATGGTAATCTAAGTGCCTTGGTGGATTTTGATCTACGTACACCTACGGTTTTTGACAACAAATACTATGTGAACCTTGGTGAGCGGAAAGGTCTTATCCAGAGCGACCAA
GAATTGTTCTCTAGCCCCAATGCCACGGACACAATCCCTTTGGTGAGATCATATGCTAATAGCACACAAACCTTCTTCAATGCGTTTGTGGAGGCAATGAATAGGATGGGAAATATCACA
CCTCTCACAGGAACTCAAGGACAAATCAGGTTGAATTGTAGGGTGGTGAATTCCAACTCTCTACTCCATGATGTGGTTGATATTGTTGACTTTGTTAGCTCTATGTGA

Retrieve as FASTA