Entry information : AlyPrx[P]28
Entry ID 7567
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2012-08-13 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-08-13 (Qiang Li)
Peroxidase information: AlyPrx[P]28
Name AlyPrx[P]28
Class Class III peroxidase     [Orthogroup: Prx025]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrx[P]28
start..stop
S start..stop
AhalPrx11 556 0 1..291 5..317
BstrPrx01 513 0 4..291 8..317
BrPrx28-1Ab_other 506 0 5..291 9..317
BrPrx57-1Aa_other 383 7e-135 1..289 3..310
Literature and cross-references AlyPrx[P]28
DNA ref. Phytozome 12:   scaffold_3 (1166727..1165085)
Protein sequence: AlyPrx[P]28
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   291 (274)
PWM (Da):   %s   31342.64 (29485.5)  
PI (pH):   %s   4.48 (4.41) Peptide Signal:   %s   cut: 18 range:18-291
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
KLFTLLSILS IIPVTFAQLR VGFYNNSCPS AETIVRNLVS DEFESDPTIA AALLRMNFHD CFVCCDGSIL LNSTDSERFV GPNLSVRGFE LIDEIKTELE AQCPSNVSCA DIMALATRDS  VALAGGPNYN ITTGRRDGLK TNLVGPTASV AAFLSFFGDK TMTTLDAVAL LGAHTVGVGS CGLFRNRLTN FNGTGLPDPS MDPDLVALDR STPLTFDNAF FGQIRARRGV LQLDQRLATD 
EATSSVVAQY AADNDLFKRQ FAIAMVKLGA VNVYTGEDGE IRTNCWEFND N 

Retrieve as FASTA  
Remarks Pseudogene from genomic. Sequence from genomic (chromo 3). No prediction from phytozome. complement(join(1165085..1165339,1165854..1166301,1166538..1166727))
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AAATTGTTTA CTCTACTCTC AATTCTTTCC ATTATTCCGG TCACGTTTGC TCAATTGAGA GTCGGATTTT ATAACAACTC ATGCCCTAGT GCAGAAACTA TCGTTCGGAA TCTCGTTAGC  GATGAGTTCG AGAGTGACCC TACGATTGCA GCCGCTTTGC TTCGGATGAA TTTTCACGAC TGTTTTGTTG GGGTATGAGT CTCATCGAAC ATTATTCCAA AAATTGTATT GACATTTTGA  TATGTTGAGA CTAATTTCAA TTCGAGTGTC GGAGTGTGAA ACCTCAAATA CATAAAATGA GAATTTTAGG TTTTAATTGG TTTGTGCTTA GAATAGAAAT TAAATATTGT TTAAACATTG  TGTTTTAAAA AACTTTTGGA TCGATTGATT AATTTTGGTT AAAACACTTT ACATATATCC TATAAGGCTG CGACGGTTCT ATCCTATTAA ACTCGACTGA TTCAGAAAGA TTCGTCGGTC  CAAACTTGAG CGTGAGAGGC TTTGAGCTAA TCGACGAGAT CAAGACCGAG CTTGAGGCTC AGTGTCCATC AAACGTCTCG TGCGCTGACA TAATGGCACT TGCCACACGT GACTCTGTGG  CATTAGCCGG AGGGCCGAAC TACAACATCA CCACGGGACG ACGTGATGGG TTGAAAACTA ATGCGAGCGG CGTGTTTGAn CTTGTTGGAC CAACCGCCTC CGTGGCTGCC TTTCTCAGTT  TCTTTGGGGA CAAAACGATG ACCACGTTGG ATGCAGTGGC TCTGTTGGGT GCACACACGG TTGGTGTAGG ATCTTGTGGT CTATTCAGGA ACCGGCTCAC AAATTTCAAC GGAACCGGAC  TTCCTGACCC ATCCATGGAC CCGGATTTGG TTGCCAAGTA AGCAAGACAA GCATAATTAT AAATCATTTT CAAGTCCGAA ATTCAGTTTT AAGTTTATAC TTCACGGGAC TAACTTTTGT  CGTTTTTAAC TTTATATTGT TGGTTTTAGA ATATTAGTAG CTATAATGAA ATCTAGTATG GATCGGTTTA GTACGATATC AGTTTTTGGT CCCTTTGTTT TGAATTCAGA TTGTAGTCAA  ATCTATTTTT AATTTCACAA GAATTTAAAT TTTGGTTTTG ATTTTCTTTT TGAGTCGGTT TGAATTCAGA TTTGGTTTTG TTTCCTCAGA TAGCAAAAAT TAAAATTACT TAAAACTAAA  TCAAAAGTCT TTTTCGTTTT TGATATTTTT TCTTTTGATT CATAGTAAGT CCATTAGGCA GTTGAATCAT TGCTAATTAA CTACCCTATC AACGAGAGAA AGATATAAGC GATGCATTAA  TTAGTAAACG AACGTAAGAG TTAATATTTG AAAGCTTTAT GTATACAGTT TAACCAGTAA ACAACTGGAC TGGACAGGTC AACACCGTTG ACTTTTGATA ACGCATTCTT TGGGCAAATC  CGAGCGAGGA GAGGAGTTTT GCAACTTGAC CAGCGGCTCG CAACCGACGA AGCAACTTCT AGTGTGGTGG CTCAATACGC AGCTGACAAC GACTTATTCA AACGCCAGTT TGCGATTGCG 
ATGGTGAAAT TGGGAGCCGT TAATGTCTAC ACCGGTGAAG ACGGTGAGAT CAGAACAAAT TGTTGGGAAT TCAACGATAA TTAA 

Retrieve as FASTA