Entry information : AlyGPx05
Entry ID 7572
Creation 2010-08-11 (Christophe Dunand)
Last sequence changes 2010-08-11 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2010-12-24 (Marie Brette (Scipio))
Peroxidase information: AlyGPx05
Name AlyGPx05
Class Plant glutathione peroxidase    [Orthogroup: Gpx2002]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyGPx05
start..stop
S start..stop
AtGPx05 324 5e-116 1..173 1..173
BrGPx05_other 323 1e-115 1..170 1..168
BnGPx05_other 321 2e-114 1..170 1..168
ThasGPx04 308 2e-109 1..172 1..170
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 21039575..21039634 60 N° 2 21039732..21039808 77 N° 3 21039922..21039983 62 N° 4 21040067..21040185 119
N° 5 21040315..21040482 168 N° 6 21040583..21040618 36  
join(21039575..21039634,21039732..21039808,21039922..21039983,21040067..21040185 ,21040315..21040482,21040583..21040618)


exon

Literature and cross-references AlyGPx05
DNA ref. Phytozome 11:   scaffold_5 (21039575..21040618)
Protein sequence: AlyGPx05
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   173
PWM (Da):   %s   19283.01  
PI (pH):   %s   9.9
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGASISSSVSEKSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDGFVILAFPCNQFLYQEPGTSQDAHQFACTRFKAEYPVFQVRVNGQNAAPVYKFLKSKKPSFLGSRIKWNFTKFLVGKDGQVIDRYGTTVPPLSIQKDIEKALAQVL*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, 5 introns).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTGCTTCTATATCATCATCAGTGTCCGAGAAATCAATCCATCAATTCACCGTCAAGGTTTTTTTTTTTATTATTATTTTATGAATCCCTTTTCTTCTTCTTCTTCTTCTTCGCGTT
TCTAAATTATTATTGTTGTTGGTTGGTCGGGAATTAGGATAGCTCCGGCAAGGAGGTTGACCTAAGCGTATATCAAGGGAAAGTGTTGCTCGTCGTCAATGTCGCTTCTAAATGGTCCGT
CGTGGAGAGATCCTCTCCTCTCCTCTGGGTTTTTTTCTTGACTGCCTAAATTAAATAAATGGTTGTAATTTTTGTTAAATATGAGTACTTATTAAATTGGGCAACAGCGGATTCACGGAA
TCCAATTATACCCAGCTGACGGAACTTTACCGGAAATATAAAGATCAAG
GTCACAATTAGACTCTTCTCTTTGTCTCTTCATTTGGTTTCCATCATCTATTTTGTTGTTTATGTAATGGG
TTTCCTTCACAGGGTTTGTGATATTGGCGTTTCCTTGCAACCAGTTTCTCTACCAAGAGCCTGGCACCAGCCAAGATGCTCATCAATTTGCCTGTACTCGGTTCAAGGCCGAATACCCCG
TTTTCCAAAAG
GTATATTCTTTTTGTTATTAACAACAACAAAACACTCTTGCTTCACATAATAATCATTTGTAATTGCTCTTTCTATATGCCTTTAATAGGTGATTTTGTAACTTTATAA
GCTTGATCATCATCATGTAGGTGCGTGTCAATGGACAAAACGCTGCACCAGTCTACAAATTCCTCAAATCTAAGAAACCCTCTTTTCTTGGAAGTCGTATCAAATGGAACTTCACCAAGT
TCTTGGTCGGCAAAGATGGCCAAGTCATTGATCGTTATGGCACAACGGTGCCTCCTCTATCCATCCAG
GTCTCTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTCTTCTT
GATATTCTTTATGTTTAGCTTACTTCATGTTTGTTTTCTGCATAACAGAAAGACATCGAGAAAGCCCTTGCACAAGTATTATGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGTGCTTCTATATCATCATCAGTGTCCGAGAAATCAATCCATCAATTCACCGTCAAGGATAGCTCCGGCAAGGAGGTTGACCTAAGCGTATATCAAGGGAAAGTGTTGCTCGTCGTC
AATGTCGCTTCTAAATG
CGGATTCACGGAATCCAATTATACCCAGCTGACGGAACTTTACCGGAAATATAAAGATCAAGGGTTTGTGATATTGGCGTTTCCTTGCAACCAGTTTCTCTAC
CAAGAGCCTGGCACCAGCCAAGATGCTCATCAATTTGCCTGTACTCGGTTCAAGGCCGAATACCCCGTTTTCCAAAAG
GTGCGTGTCAATGGACAAAACGCTGCACCAGTCTACAAATTC
CTCAAATCTAAGAAACCCTCTTTTCTTGGAAGTCGTATCAAATGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGGCCAAGTCATTGATCGTTATGGCACAACGGTGCCTCCTCTATCC
ATCCAG
AAAGACATCGAGAAAGCCCTTGCACAAGTATTATGA

Retrieve as FASTA