Entry information : CjaGPx[P]04-B
Entry ID 7640
Creation 2010-10-21 (Myriam Duval)
Last sequence changes 2012-05-24 (Christophe Dunand)
Sequence status theoretical translation / pseudogene
Reviewer Not yet reviewed
Last annotation changes 2012-05-24 (Christophe Dunand)
Peroxidase information: CjaGPx[P]04-B
Name CjaGPx[P]04-B
Class Animal glutathione peroxidase     [Orthogroup: Gpx1002]*
Taxonomy Eukaryota Metazoa Chordata Mammalia Cebidae Callithrix
Organism Callithrix jacchus (Common marmoset)    [TaxId: 9483 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CjaGPx[P]04-B
start..stop
S start..stop
PtroGPx04 384 1e-138 1..191 7..197
HsGPx04-A 384 1e-138 1..191 7..197
MnemGPx04 383 2e-138 1..191 7..197
MmulGPx04 383 2e-138 1..191 7..197
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1..486 486  
complement(join(1..486))


exon

Literature and cross-references CjaGPx[P]04-B
Protein sequence: CjaGPx[P]04-B
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   191 (172)
PWM (Da):   %s   21085.47 (19253.4)  
PI (pH):   %s   8.32 (8.05) Peptide Signal:   %s   cut: 20 range:20-191
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CRLLKPALLC GALAAPGLAG TMCASQDDWR SARSMHEFSA KDIDGHTVNL DKYRGFVCIV TNVASQUGKT QVNYTQLVDL HARYAECGLR ILAFPCNQFG KQEPGSNEEI KEFAAGYNVK 
FDMFSKICVN GDDAHPLWKW MKIQPKGKGT LGNAIKWNFT KFLVDKNGCV VKRYGPMEEP QVIEKDLPCY F 

Retrieve as FASTA  
Remarks Pseudogene, partial seq from genomic (chromo X , no intron). 5'end is missing. Seleno cystein posn 72.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGCCGCTTGC TGAAGCCGGC GCTGCTGTGT GGGGCTCTGG CCGCGCCAGG CCTGGCCGGC ACCATGTGCG CGTCCCAGGA CGACTGGCGC TCAGCGCGCT CCATGCACGA GTTTTCCGCC  AAGGACATCG ACGGGCACAC GGTTAACCTG GACAAGTACC GGGGCTTCGT GTGCATCGTC ACCAACGTGG CCTCCCAGTG AGGCAAAACC CAGGTGAACT ACACTCAGCT TGTCGACCTG  CACGCCCGAT ACGCCGAGTG CGGTTTGCGG ATCCTGGCCT TCCCCTGCAA CCAGTTCGGG AAGCAGGAGC CAGGGAGTAA CGAAGAGATC AAAGAGTTCG CCGCTGGCTA TAACGTCAAA  TTCGACATGT TCAGCAAGAT CTGCGTGAAC GGGGATGACG CCCACCCGCT GTGGAAGTGG ATGAAGATCC AGCCCAAGGG AAAGGGCACC CTGGGGAATG CCATCAAGTG GAACTTCACC 
AAGTTC 

Retrieve as FASTA