Entry information : CjaGPx01-B
Entry ID 7641
Creation 2010-10-21 (Myriam Duval)
Last sequence changes 2010-10-26 (Myriam Duval)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2012-05-24 (Christophe Dunand)
Peroxidase information: CjaGPx01-B
Name CjaGPx01-B
Class Animal glutathione peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Metazoa Chordata Mammalia Cebidae Callithrix
Organism Callithrix jacchus (Common marmoset)    [TaxId: 9483 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CjaGPx01-B
start..stop
S start..stop
HsGPx01-B 152 4e-50 13..89 14..90
MmGPx01 149 1e-47 1..83 1..82
RnoGPx01 145 2e-46 1..83 1..82
PtroGPx01-A 144 7e-46 13..83 12..82
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1..267 267  
complement(join(1..267))


exon

Literature and cross-references CjaGPx01-B
Protein sequence: CjaGPx01-B
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   89
PWM (Da):   %s   9205.89  
PI (pH):   %s   11.21
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MCAARLAAAV AAQSVYAFSA RPLAGGEPVS LGSLRGKVLL IENVASLUGT TVRDYTQMNE LQRRLGPRGL VVLGFPCNQF GHQVRRAGR 

Retrieve as FASTA  
Remarks Pseudogene from genomic (chromo 15, no intron) Seleno cysteine posn 48. End missing (8 aa). Insertion of some aa somewhere..
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTGTGCTG CTCGGCTAGC GGCGGCGGTG GCCGCCCAGT CGGTGTACGC CTTCTCGGCG CGACCGCTGG CCGGCGGGGA GCCTGTGAGC CTGGGTTCCC TGCGGGGCAA GGTGCTGCTT  ATCGAGAATG TGGCGTCCCT CTGAGGCACC ACGGTCCGGG ACTACACCCA GATGAACGAG CTGCAGCGGC GCCTCGGGCC CCGGGGCCTT GTGGTGCTCG GCTTCCCGTG CAACCAGTTT 
GGACATCAGG TGCGCCGGGC GGGGCGG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTGTGCTG CTCGGCTAGC GGCGGCGGTG GCCGCCCAGT CGGTGTACGC CTTCTCGGCG CGACCGCTGG CCGGCGGGGA GCCTGTGAGC CTGGGTTCCC TGCGGGGCAA GGTGCTGCTT  ATCGAGAATG TGGCGTCCCT CTGAGGCACC ACGGTCCGGG ACTACACCCA GATGAACGAG CTGCAGCGGC GCCTCGGGCC CCGGGGCCTT GTGGTGCTCG GCTTCCCGTG CAACCAGTTT 
GGACATCAGG TGCGCCGGGC GGGGCGG 

Retrieve as FASTA