Entry information : PmargPrx03
Entry ID 7701
Creation 2010-11-08 (Qiang Li)
Last sequence changes 2010-12-23 (Qiang Li)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2012-06-14 (Qiang Li)
Peroxidase information: PmargPrx03
Name PmargPrx03
Class Class III peroxidase     [Orthogroup: Prx076]*
Taxonomy Eukaryota Viridiplantae Streptophyta Zygnemophyceae Peniaceae Penium
Organism Penium margaritaceum    [TaxId: 102169 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmargPrx03
start..stop
S start..stop
PmargPrx06 384 1e-136 1..233 1..232
PmargPrx05 237 1e-77 1..232 54..288
PmargPrx02 221 6e-72 1..232 28..262
RobtPrx02 203 2e-65 2..232 8..234
Literature and cross-references PmargPrx03
Literature Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. Broad phylogenomic sampling and the sister lineage of land plants. PLoS ONE 7 (1), e29696 (2012).
EST ref. GenBank:   HO622609.1
Protein sequence: PmargPrx03
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   233
PWM (Da):   %s   24146.51  
PI (pH):   %s   8.36
Sequence
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Send to Peroxiscan
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NFYQSTCPSA SSIVADGVAK AYRKSSYIAA PLLLLQFVDC RVQGCDASLL LDAKGSKNGE KAAVSGILDE AALDVVDSIK SRLESACPGV VSCADVLALA AREAVHLAGG PYIPVKTGRR 
DSKTSSAAAV KGPGFPGATF NASSLIANFA RVGLNAVDLV ALSGAHTLGK AARPRVENRL APNADPTMNS GIRNDLNRKC GAPKVDDDVT VDIDLRTPLK FDNKYFVNIV EGK 

Retrieve as FASTA  
Remarks Partial sequence from EST (HO622609.1). Short PS and 3'end are missing.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AACTTTTACC AGTCGACGTG TCCCAGCGCC AGCAGCATTG TGGCCGACGG GGTCGCCAAG GCGTACAGGA AGAGCTCCTA CATTGCAGCC CCGCTCCTCC TCCTGCAGTT CGTGGACTGC  CGCGTGCAGG GCTGTGACGC ATCGCTGCTG CTGGACGCGA AGGGCAGCAA GAACGGTGAG AAGGCGGCGG TGAGTGGCAT CCTGGACGAG GCGGCGCTGG ACGTTGTGGA CAGCATCAAG  AGCCGGCTGG AGTCGGCGTG CCCCGGCGTC GTGTCGTGCG CCGATGTGCT TGCGCTCGCC GCCCGTGAGG CCGTGCATCT GGCTGGAGGC CCATACATTC CAGTGAAGAC AGGGCGGCGT  GACAGCAAGA CATCGTCTGC TGCAGCGGTG AAAGGCCCGG GCTTCCCTGG AGCTACGTTC AATGCGTCGA GCCTCATCGC CAACTTTGCC CGAGTGGGAC TGAACGCTGT TGACCTTGTT  GCACTCTCTG GTGCACACAC CCTGGGCAAG GCCGCAAGGC CACGAGTGGA GAACCGGCTG GCCCCCAATG CTGATCCCAC CATGAACAGT GGGATTCGCA ACGACCTCAA CCGCAAGTGC 
GGCGCGCCCA AGGTGGACGA TGATGTGACG GTGGATATCG ATCTCCGCAC ACCCTTGAAG TTCGACAACA AGTACTTTGT GAACATCGTG GAGGGCAAG 

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cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTGCAGCTCT TTCACCACCG TCGTCGTGTT GCAGAAAACG CTATGGGAGC GACGGATAGG CAGAGAGGTC GCTTGTGATG CGCCATGGCA CTCCTGACGC GCCACACGTG ACCACCCAAC  CCTCGTTCCA GTTCCACGTA CTTATGCGCA AGACATTTTG CAGATTGGAA CATCCTATTC GATTCTCAAT TCGCCCCCCT GGTCGCTCAT TCTGACTGAA TCCGATCCAC CGGTCGCTCC  CTTCGGCGTT GTCTTCCACC GTCTTCGACT TCCGCCCAGG ATCACCGTCG CAGGCACGGC ATCAGCCATG GCCAACGGCG CGCAGAAGTC AGTGGTTGGC CGTCGGGCGC TGCTGCTGCT  GATCGCCGCA TTGGTGGCGG CAGCATCTGC TGCGAGCACC GCCGCCGCAT CCGGCGGGCT GCGTGCCAAC TTTTACCAGT CGACGTGTCC CAGCGCCAGC AGCATTGTGG CCGACGGGGT  CGCCAAGGCG TACAGGAAGA GCTCCTACAT TGCAGCCCCG CTCCTCCTCC TGCAGTTCGT GGACTGCCGC GTGCAGGGCT GTGACGCATC GCTGCTGCTG GACGCGAAGG GCAGCAAGAA  CGGTGAGAAG GCGGCGGTGA GTGGCATCCT GGACGAGGCG GCGCTGGACG TTGTGGACAG CATCAAGAGC CGGCTGGAGT CGGCGTGCCC CGGCGTCGTG TCGTGCGCCG ATGTGCTTGC  GCTCGCCGCC CGTGAGGCCG TGCATCTGGC TGGAGGCCCA TACATTCCAG TGAAGACAGG GCGGCGTGAC AGCAAGACAT CGTCTGCTGC AGCGGTGAAA GGCCCGGGCT TCCCTGGAGC  TACGTTCAAT GCGTCGAGCC TCATCGCCAA CTTTGCCCGA GTGGGACTGA ACGCTGTTGA CCTTGTTGCA CTCTCTGGTG CACACACCCT GGGCAAGGCC GCAAGGCCAC GAGTGGAGAA  CCGGCTGGCC CCCAATGCTG ATCCCACCAT GAACAGTGGG ATTCGCAACG ACCTCAACCG CAAGTGCGGC GCGCCCAAGG TGGACGATGA TGTGACGGTG GATATCGATC TCCGCACACC 
CTTGAAGTTC GACAACAAGT ACTTTGTGAA CATCGTGGAG GGCAAGGG 

Retrieve as FASTA