Entry information : PmargPrx04
Entry ID 7702
Creation 2010-11-08 (Qiang Li)
Last sequence changes 2010-11-24 (Qiang Li)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2012-06-14 (Qiang Li)
Peroxidase information: PmargPrx04
Name PmargPrx04
Class Class III peroxidase     [Orthogroup: Prx076]*
Taxonomy Eukaryota Viridiplantae Streptophyta Zygnemophyceae Peniaceae Penium
Organism Penium margaritaceum    [TaxId: 102169 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmargPrx04
start..stop
S start..stop
PmargPrx05 316 1e-109 1..185 174..357
PmargPrx02 291 2e-100 1..179 148..325
PmargPrx01 214 1e-72 27..178 1..146
PmargPrx06 214 2e-70 1..178 118..293
Literature and cross-references PmargPrx04
Literature Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. Broad phylogenomic sampling and the sister lineage of land plants. PLoS ONE 7 (1), e29696 (2012).
EST ref. GenBank:   HO626986.1
Protein sequence: PmargPrx04
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   185
PWM (Da):   %s   20251.39  
PI (pH):   %s   10.73
Sequence
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Send to Peroxiscan
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GRRDGKSSVA MKAESFLPAA TLNTSGLIAN FAKVGLNLVD VVALSGAHTI GRGHCKSVAN RLRPNYDPTM SRKLRTQLTM VCYHGAPRLD PMAMFVSDLQ TPVTFDNQYY KNILAGNGAF 
TSDQALLYDR RSKPYVRLYA QNQNAFFNQF KLSMLKMGNI RTLTGTQGEI RRVCSRANGV PTAPK 

Retrieve as FASTA  
Remarks Partial sequence from EST (HO626986.1). 5'end is missing.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGAAGGCGCG ACGGAAAGTC GTCGGTGGCG ATGAAGGCGG AGAGCTTCCT CCCTGCAGCC ACTCTGAATA CGTCCGGCCT CATCGCCAAT TTTGCAAAAG TGGGCCTTAA CCTTGTCGAC  GTCGTCGCCC TCTCCGGTGC GCACACCATC GGGCGAGGCC ACTGCAAGAG CGTGGCGAAC CGGCTGCGGC CCAACTACGA CCCCACCATG TCGCGCAAGC TGCGCACGCA GCTAACCATG  GTGTGCTACC ACGGCGCCCC GCGCCTCGAC CCCATGGCCA TGTTTGTCAG CGACCTGCAG ACGCCGGTCA CGTTCGACAA TCAGTACTAC AAGAACATTC TGGCAGGCAA CGGCGCATTC  ACATCGGACC AAGCGCTGCT CTACGACCGC CGCTCAAAGC CCTATGTGCG TCTGTACGCA CAGAACCAGA ATGCCTTCTT CAATCAGTTC AAGCTGTCGA TGCTGAAGAT GGGCAACATC 
CGCACCCTCA CAGGCACCCA GGGTGAGATC CGCCGCGTCT GCAGCAGAGC CAATGGGGTC CCCACGGCTC CCAAGTAA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TGGGAAGGCG CGACGGAAAG TCGTCGGTGG CGATGAAGGC GGAGAGCTTC CTCCCTGCAG CCACTCTGAA TACGTCCGGC CTCATCGCCA ATTTTGCAAA AGTGGGCCTT AACCTTGTCG  ACGTCGTCGC CCTCTCCGGT GCGCACACCA TCGGGCGAGG CCACTGCAAG AGCGTGGCGA ACCGGCTGCG GCCCAACTAC GACCCCACCA TGTCGCGCAA GCTGCGCACG CAGCTAACCA  TGGTGTGCTA CCACGGCGCC CCGCGCCTCG ACCCCATGGC CATGTTTGTC AGCGACCTGC AGACGCCGGT CACGTTCGAC AATCAGTACT ACAAGAACAT TCTGGCAGGC AACGGCGCAT  TCACATCGGA CCAAGCGCTG CTCTACGACC GCCGCTCAAA GCCCTATGTG CGTCTGTACG CACAGAACCA GAATGCCTTC TTCAATCAGT TCAAGCTGTC GATGCTGAAG ATGGGCAACA  TCCGCACCCT CACAGGCACC CAGGGTGAGA TCCGCCGCGT CTGCAGCAGA GCCAATGGGG TCCCCACGGC TCCCAAGTAA AACAGCAGTG GAGGAGGTGG AGGCAACGGA CAATATCATT  TGCCCACCTC AGCTGAGCAC GGGCATTTGA GATTCCCTCC CGGAAGCTTC TTCAGAAACG CATTGTGGCC TCTCTGACTA GTTCACCAGA GGACGCATGG AAGGTCACAA CAGCAGGAAA  CTCCGGTGTA CAACTTGTCC CTCTGTTGGA CAGTGACAAC TGCTCATTAT GGATAGACAG TGGTTGGAAT ATGTCAGGAT TAGTGGTAGC CACCAGAATT TCTGATGCCT CGGGAATAAA 
ACTGGAAAAT AAGTGACAAT CTCTCT 

Retrieve as FASTA