Entry information : CglobAPx-R
Entry ID 7709
Creation 2010-11-02 (Qiang Li)
Last sequence changes 2010-12-22 (Qiang Li)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2012-06-12 (Qiang Li)
Peroxidase information: CglobAPx-R
Name CglobAPx-R
Class Ascorbate peroxidase related     [Orthogroup: APx-R001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Coleochaetophyceae Chaetosphaeridiaceae Chaetosphaeridium
Organism Chaetosphaeridium globosum    [TaxId: 96477 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CglobAPx-R
start..stop
S start..stop
MbraAPx-R01 285 1e-98 1..226 3..228
CirAPx-R01 267 1e-91 1..225 3..226
SmusAPx-R01 267 2e-90 2..226 74..298
GrAPx-R 267 3e-90 1..226 108..331
Literature and cross-references CglobAPx-R
Literature Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. Broad phylogenomic sampling and the sister lineage of land plants. PLoS ONE 7 (1), e29696 (2012).
EST ref. GenBank:   HO387037.1 [3' end]
Protein sequence: CglobAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   227
PWM (Da):   %s   24137.35  
PI (pH):   %s   5.12
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
EALQRGIPRA KAPAVLRLPF HDAFTYDPAT EPGGMNGSIx FELDRDESVG LKRAVKPLRV VKEKLEPQLT VSWADLIALG GAVAVASCGG PAIPVRLGRL DSGSPDPPNQ MPPETLSAPA 
VKEAFQAKGF SVRETVALLG AHTIGGKGFG DPDVFDNAYY RMLLERPWEK KGGDSMAGMV GLPSDRAVAG DEDAIVWIRA YANDQALFFE DFAAAYQKMV NLGARWA 

Retrieve as FASTA  
Remarks Partial sequence from EST (HO387037.1). 5' end is missing.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GAGGCCCTCC AGCGCGGCAT CCCCCGCGCC AAGGCCCCCG CCGTCCTGCG CCTCCCCTTC CACGACGCCT TCACCTACGA CCCCGCCACG GAACCGGGGG GCATGAATGG CTCCATCCnC  TTTGAGCTGG ACCGCGACGA GAGCGTGGGC CTCAAGCGCG CGGTCAAGCC TCTGCGCGTC GTGAAGGAGA AGCTTGAGCC GCAGCTCACG GTCTCCTGGG CCGACCTGAT CGCGCTGGGC  GGTGCGGTGG CGGTTGCCAG CTGTGGGGGG CCGGCCATTC CGGTGCGCCT GGGCCGGCTG GACAGCGGTT CCCCAGACCC GCCCAACCAG ATGCCCCCCG AGACGCTGTC AGCACCGGCC  GTCAAGGAGG CCTTCCAGGC CAAGGGCTTC AGTGTGCGTG AGACGGTGGC CTTGTTGGGC GCGCACACCA TCGGGGGGAA GGGCTTTGGG GACCCGGACG TGTTTGACAA CGCCTACTAC  CGGATGCTCC TGGAGCGGCC GTGGGAGAAG AAAGGCGGGG ACTCCATGGC GGGCATGGTG GGTCTCCCGT CAGACAGGGC CGTCGCGGGA GATGAGGACG CGATTGTATG GATCCGAGCG 
TATGCCAACG ACCAAGCTCT CTTCTTTGAA GACTTTGCTG CAGCTTACCA GAAAATGGTC AACCTTGGCG CTCGTTGGGC TTGA 

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cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TAACCTTAAT GGTAGCCGAC GTTAGGTACT TATGTTCTCT GATGAGTGAC AAGAGCTTTG ACAACTCTGT ATCCCCGCCG CCCTCGTGGA GGCCCTCCAG CGCGGCATCC CCCGCGCCAA  GGCCCCCGCC GTCCTGCGCC TCCCCTTCCA CGACGCCTTC ACCTACGACC CCGCCACGGA ACCGGGGGGC ATGAATGGCT CCATCCnCTT TGAGCTGGAC CGCGACGAGA GCGTGGGCCT  CAAGCGCGCG GTCAAGCCTC TGCGCGTCGT GAAGGAGAAG CTTGAGCCGC AGCTCACGGT CTCCTGGGCC GACCTGATCG CGCTGGGCGG TGCGGTGGCG GTTGCCAGCT GTGGGGGGCC  GGCCATTCCG GTGCGCCTGG GCCGGCTGGA CAGCGGTTCC CCAGACCCGC CCAACCAGAT GCCCCCCGAG ACGCTGTCAG CACCGGCCGT CAAGGAGGCC TTCCAGGCCA AGGGCTTCAG  TGTGCGTGAG ACGGTGGCCT TGTTGGGCGC GCACACCATC GGGGGGAAGG GCTTTGGGGA CCCGGACGTG TTTGACAACG CCTACTACCG GATGCTCCTG GAGCGGCCGT GGGAGAAGAA  AGGCGGGGAC TCCATGGCGG GCATGGTGGG TCTCCCGTCA GACAGGGCCG TCGCGGGAGA TGAGGACGCG ATTGTATGGA TCCGAGCGTA TGCCAACGAC CAAGCTCTCT TCTTTGAAGA 
CTTTGCTGCA GCTTACCAGA AAATGGTCAA CCTTGGCGCT CGTTGGGCTT GATGGGTCCT CCAAAGCAGC TGGATAGGGG GGCGGGGAGT ACAGAGTTGT CAAAGCTCTT GTCACTCA 

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