Entry information : CglobAPx03
Entry ID 7711
Creation 2010-11-02 (Qiang Li)
Last sequence changes 2010-12-21 (Qiang Li)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2012-06-12 (Qiang Li)
Peroxidase information: CglobAPx03
Name CglobAPx03
Class Ascorbate peroxidase     [Orthogroup: APx003]*
Taxonomy Eukaryota Viridiplantae Streptophyta Coleochaetophyceae Chaetosphaeridiaceae Chaetosphaeridium
Organism Chaetosphaeridium globosum    [TaxId: 96477 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CglobAPx03
start..stop
S start..stop
SmAPx02-1_0 421 1e-149 1..285 4..296
SmAPx02-2_60 417 1e-148 1..285 4..296
LsaAPx02 412 1e-146 1..286 4..285
HaAPx03 409 2e-145 1..286 4..285
Literature and cross-references CglobAPx03
Literature Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. Broad phylogenomic sampling and the sister lineage of land plants. PLoS ONE 7 (1), e29696 (2012).
EST ref. GenBank:   HO403740.1 [3' end]
Protein sequence: CglobAPx03
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   306
PWM (Da):   %s   32802.96 Transmb domain:   %s   o257-279i
PI (pH):   %s   9.24
Sequence
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Send to Peroxiscan
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PVVNETYKKA VEGARRELRA FIAEKNCAPL MLRLAWHDAG TYDKNTRTGG PNGSIRSDKE FKHGANNGLK TAIDWCEAFK TKYPILSYAD IYQLGGVVAV EVTGGPTVDF TPGRKDSLAC  TPDGRLPDAT KGSMHLRDVF GRMGLSDQDI VALSGAHTIG RAHKDRSGFE GPWTKEPLKF DNSYFVQLLK GEAEGLLQLP TDKVLVTDPK FRPYVEQYAK SQDVFFADYA AAHKRLSELG 
CTLGKGDGSA GPVNAGTVLL QSAFGVAVAA VVVIAGVVIE TRKKVRVGVY ASPAPVNAGK MALQHL 

Retrieve as FASTA  
Remarks Partial sequence from EST (HO403740.1). Short 5' end is missing.
CDS
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CCGGTCGTAA ATGAGACATA CAAGAAAGCT GTGGAGGGCG CACGCAGAGA GCTGCGGGCC TTTATTGCAG AGAAAAATTG TGCTCCACTC ATGCTGCGGC TTGCCTGGCA TGATGCAGGG  ACCTACGACA AGAACACAAG GACAGGAGGT CCGAATGGCT CTATAAGGAG TGATAAGGAA TTCAAGCACG GTGCTAACAA TGGCTTGAAA ACAGCAATCG ACTGGTGTGA GGCATTCAAG  ACGAAGTACC CTATCCTCTC GTATGCGGAC ATCTACCAGC TTGGGGGAGT GGTCGCTGTT GAAGTCACCG GCGGCCCCAC TGTGGACTTC ACCCCCGGTC GGAAGGACTC TTTGGCATGC  ACACCGGACG GCCGCCTCCC AGATGCTACC AAGGGCTCCA TGCACCTGCG TGATGTCTTT GGAAGGATGG GCCTCTCGGA TCAGGACATT GTCGCCCTCT CTGGAGCGCA CACAATTGGC  CGGGCGCACA AGGACCGCTC CGGCTTTGAG GGGCCGTGGA CCAAGGAGCC TCTCAAGTTT GACAACTCGT ACTTTGTGCA ACTGCTGAAG GGCGAGGCGG AGGGGCTCCT GCAGCTGCCC  ACTGACAAGG TGCTCGTGAC GGACCCCAAG TTCCGGCCGT ATGTGGAGCA GTATGCCAAA AGTCAGGACG TCTTCTTTGC CGACTACGCC GCAGCCCACA AGCGGCTCTC TGAGCTCGGC  TGCACCCTGG GCAAGGGCGA CGGCTCTGCG GGGCCCGTAA ACGCCGGCAC CGTCCTCCTG CAGAGCGCGT TTGGCGTCGC TGTCGCCGCT GTCGTCGTCA TCGCAGGCGT GGTCATCGAG 
ACCCGCAAGA AGGTCCGCGT AGGCGTTTAC GCCTCTCCAG CGCCTGTAAA TGCCGGCAAA ATGGCTCTCC AGCACCTGTA A 

Retrieve as FASTA  
cDNA
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CCGGTCGTAA ATGAGACATA CAAGAAAGCT GTGGAGGGCG CACGCAGAGA GCTGCGGGCC TTTATTGCAG AGAAAAATTG TGCTCCACTC ATGCTGCGGC TTGCCTGGCA TGATGCAGGG  ACCTACGACA AGAACACAAG GACAGGAGGT CCGAATGGCT CTATAAGGAG TGATAAGGAA TTCAAGCACG GTGCTAACAA TGGCTTGAAA ACAGCAATCG ACTGGTGTGA GGCATTCAAG  ACGAAGTACC CTATCCTCTC GTATGCGGAC ATCTACCAGC TTGGGGGAGT GGTCGCTGTT GAAGTCACCG GCGGCCCCAC TGTGGACTTC ACCCCCGGTC GGAAGGACTC TTTGGCATGC  ACACCGGACG GCCGCCTCCC AGATGCTACC AAGGGCTCCA TGCACCTGCG TGATGTCTTT GGAAGGATGG GCCTCTCGGA TCAGGACATT GTCGCCCTCT CTGGAGCGCA CACAATTGGC  CGGGCGCACA AGGACCGCTC CGGCTTTGAG GGGCCGTGGA CCAAGGAGCC TCTCAAGTTT GACAACTCGT ACTTTGTGCA ACTGCTGAAG GGCGAGGCGG AGGGGCTCCT GCAGCTGCCC  ACTGACAAGG TGCTCGTGAC GGACCCCAAG TTCCGGCCGT ATGTGGAGCA GTATGCCAAA AGTCAGGACG TCTTCTTTGC CGACTACGCC GCAGCCCACA AGCGGCTCTC TGAGCTCGGC  TGCACCCTGG GCAAGGGCGA CGGCTCTGCG GGGCCCGTAA ACGCCGGCAC CGTCCTCCTG CAGAGCGCGT TTGGCGTCGC TGTCGCCGCT GTCGTCGTCA TCGCAGGCGT GGTCATCGAG 
ACCCGCAAGA AGGTCCGCGT AGGCGTTTAC GCCTCTCCAG CGCCTGTAAA TGCCGGCAAA ATGGCTCTCC AGCACCTGTA AACACCGGCA AAGTGGCTCT CCAGCGCTCG 

Retrieve as FASTA