Entry information : PmargAPx03
Entry ID 7754
Creation 2010-11-04 (Qiang Li)
Last sequence changes 2010-12-09 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-06-13 (Christophe Dunand)
Peroxidase information: PmargAPx03
Name PmargAPx03
Class Ascorbate peroxidase    [Orthogroup: APx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Zygnemophyceae Peniaceae Penium
Organism Penium margaritaceum    [TaxId: 102169 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmargAPx03
start..stop
S start..stop
SsAPx03_AU1 448 8e-161 1..297 1..297
SpraAPx03 446 5e-160 1..296 1..298
SmAPx02-1_0 435 2e-155 1..296 1..295
SmAPx02-2_60 434 2e-155 1..296 1..295
Literature and cross-references PmargAPx03
Literature Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. Broad phylogenomic sampling and the sister lineage of land plants. PLoS ONE 7 (1), e29696 (2012).
EST ref. GenBank:   HO609227.1   HO627077.1
Protein sequence: PmargAPx03
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   298
PWM (Da):   %s   32100.14 Transmb domain:   %s   o269-291i
PI (pH):   %s   6.95
Sequence
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Send to Peroxiscan
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MQAPVVDAGY LKDVEGARRD LRAFISEKNC APLMLRLAFH DAGTYDPSTR SGGPNGSIRS ELEYTHGSNA GMKIAIDFCE SIKANHPRIS YADLYQLAGV VAVEVTGGPE VPFKAGRKDS  LAVTPEGRLP DATRGAQHLR DVFGRMGFSD RDIVAISGAH TLGRAHKERS GFEGAWTKQP LKFDNTYYTE LLKGEADGLL QLPTDKCLLS DAGFRPYVEL YAKDQDAFFA DYSAAHKRMS 
ELGCHDTSPA FWTDKGESSA AAPRTNASVL LAQAAVGVAA TAVVLFLGYA NELRRKAR 

Retrieve as FASTA  
Remarks Complete sequence from 2 ESTs. Strain="SKD-2004, CL-18".
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CGGGAGAAGT GTTTCTGCCC ACGTTCCCCG CGGCTGGCCG TTnTCAGCAG nTTGTCTGAC CCCCCCTCCC GCACCAAGAT GCAGGCTCCG GTCGTGGATG CTGGCTATCT GAAGGACGTC  GAAGGGGCCC GGCGGGACTT GCGGGCTTTC ATCGCGGAGA AGAACTGTGC ACCGCTGATG CTGCGTCTGG CGTTCCACGA CGCGGGGACG TACGACCCGT CAACACGGAG CGGCGGCCCA  AATGGTTCGA TCCGGAGCGA GCTGGAGTAC ACGCACGGCT CGAATGCTGG CATGAAGATC GCCATTGATT TCTGCGAGTC AATCAAAGCA AACCATCCCC GCATCAGCTA TGCAGACTTG  TACCAGCTGG CAGGAGTGGT GGCGGTGGAA GTGACTGGCG GGCCGGAAGT GCCGTTCAAG GCAGGCCGAA AGGACTCTCT CGCGGTGACC CCAGAAGGCC GACTACCGGA CGCAACCAGA  GGCGCGCAGC ACCTGCGCGA CGTGTTTGGC CGCATGGGCT TCTCCGACCG CGACATTGTT GCCATCTCTG GAGCACACAC GCTGGGGCGG GCACACAAGG AGAGGTCGGG GTTTGAAGGT  GCATGGACAA AGCAGCCACT CAAGTTTGAC AACACGTACT ACACCGAACT GCTGAAGGGT GAAGCCGACG GTCTGCTGCA GCTACCCACC GACAAGTGCC TGCTCTCCGA TGCCGGATTC  CGTCCCTACG TCGAGCTCTA CGCAAAGGAC CAGGATGCTT TCTTCGCCGA CTACTCTGCC GCGCACAAGC GCATGTCCGA GCTCGGCTGC CACGACACGT CGCCGGCCTT CTGGTCCGAC  AAGGGCGAGT CGAGCGCCGC CGCACCGCGC ACCAACGCCA GCGTGCTGCT GGCGCAAGCC GCCGTCGGTG TGGCAGCCAC AGCGGTTGTG CTGTTTCTGG GCTACGCGAA CGAGCTGAGG  AGAAAGGCCA GGTAGGTAGG TTGGTAGGAG TGGCTATGAG CAGCGCAGTG CCAGCGCAGT GGAGGATTCG GTCGTGTACA CTTGCAGCTC CTTTGTGCAT AGTGGAAAGA GACTCTCGTG  ATTTTGCTCA CCTGCAATTG TGGACTGGTC CGACTGACTT CAGTGTACAT GAAGAAACTG TCGCCGTAAG AGCTGAGTCC AGTCAAGGCC CTGGTGGTCC TAATTGAGGT GTGAAGGGTC  GTGATACATG GACACCAGCA TTGCTCTGTC AGCAGCAGTG TGAGGGGGGC AAGCGCACAC TGGCTTTCTG GCTTGGCTGT AACTGTGCGG AAGAATCCCT GGCAGGACAT TGTGGAAGGT  ACATTGGAAG ACTGAAACAT CTGTGAGAGT TTACACAGAC CACGGGATGT GCCCTGTGAA TGTGAACAGA TGGGGGAAAA TATGGAAGAC CAGCATGTTG TAAATGTGTC ATCCTCACAC 
TCCATGCGAA TCATCAACCA TTTGC 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGCAGGCTC CGGTCGTGGA TGCTGGCTAT CTGAAGGACG TCGAAGGGGC CCGGCGGGAC TTGCGGGCTT TCATCTCGGA GAAGAACTGT GCACCGCTGA TGCTGCGTCT GGCGTTCCAC  GACGCGGGGA CGTACGACCC GTCAACACGG AGCGGCGGCC CAAATGGTTC GATCCGGAGC GAGTTGGAGT ACACGCACGG CTCGAATGCT GGCATGAAGA TCGCCATTGA TTTCTGCGAG  TCAATCAAAG CAAACCATCC CCGCATCAGC TACGCAGACT TGTACCAGCT GGCAGGAGTG GTGGCGGTGG AAGTGACTGG CGGGCCGGAA GTGCCGTTCA AGGCAGGCCG AAAGGACTCT  CTCGCGGTGA CCCCAGAAGG CCGACTACCG GACGCAACCA GAGGCGCGCA GCACCTGCGC GACGTGTTTG GCCGCATGGG CTTCTCCGAC CGCGACATTG TTGCCATCTC TGGAGCACAC  ACGCTGGGGC GGGCACACAA GGAGAGGTCG GGCTTTGAAG GTGCATGGAC AAAGCAGCCA CTCAAGTTTG ACAACACGTA CTACACCGAA CTGCTGAAGG GTGAAGCCGA CGGTCTGCTG  CAGCTACCCA CCGACAAGTG CCTGCTCTCC GATGCCGGAT TCCGTCCCTA CGTCGAGCTC TACGCAAAGG ACCAGGATGC TTTCTTCGCC GACTACTCTG CCGCGCACAA GCGCATGTCC  GAGCTCGGCT GCCACGACAC GTCGCCGGCC TTCTGGACCG ACAAGGGCGA GTCGAGCGCC GCCGCACCGC GCACCAACGC CAGCGTGCTG CTGGCGCAAG CCGCCGTCGG CGTGGCAGCC 
ACGGCGGTTG TGCTGTTTCT GGGCTACGCA AACGAGCTGA GGAGAAAGGC CAGGTAG 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
AATTCCCGGG ATCTTGGTTG TCCTCACGCT TGCGCCAAGC GAAAGGTGGC GAATTCCCGG GATACCATCT ACCCCACCGA AGTGTTTCTG CCCACGTTCC CCGCGGCTGG CCGTTGGCAG  CAGATTGTCT GACCCCCCCT CCCGCACCAA GATGCAGGCT CCGGTCGTGG ATGCTGGCTA TCTGAAGGAC GTCGAAGGGG CCCGGCGGGA CTTGCGGGCT TTCATCTCGG AGAAGAACTG  TGCACCGCTG ATGCTGCGTC TGGCGTTCCA CGACGCGGGG ACGTACGACC CGTCAACACG GAGCGGCGGC CCAAATGGTT CGATCCGGAG CGAGTTGGAG TACACGCACG GCTCGAATGC  TGGCATGAAG ATCGCCATTG ATTTCTGCGA GTCAATCAAA GCAAACCATC CCCGCATCAG CTACGCAGAC TTGTACCAGC TGGCAGGAGT GGTGGCGGTG GAAGTGACTG GCGGGCCGGA  AGTGCCGTTC AAGGCAGGCC GAAAGGACTC TCTCGCGGTG ACCCCAGAAG GCCGACTACC GGACGCAACC AGAGGCGCGC AGCACCTGCG CGACGTGTTT GGCCGCATGG GCTTCTCCGA  CCGCGACATT GTTGCCATCT CTGGAGCACA CACGCTGGGG CGGGCACACA AGGAGAGGTC GGGCTTTGAA GGTGCATGGA CAAAGCAGCC ACTCAAGTTT GACAACACGT ACTACACCGA  ACTGCTGAAG GGTGAAGCCG ACGGTCTGCT GCAGCTACCC ACCGACAAGT GCCTGCTCTC CGATGCCGGA TTCCGTCCCT ACGTCGAGCT CTACGCAAAG GACCAGGATG CTTTCTTCGC  CGACTACTCT GCCGCGCACA AGCGCATGTC CGAGCTCGGC TGCCACGACA CGTCGCCGGC CTTCTGGACC GACAAGGGCG AGTCGAGCGC CGCCGCACCG CGCACCAACG CCAGCGTGCT  GCTGGCGCAA GCCGCCGTCG GCGTGGCAGC CACGGCGGTT GTGCTGTTTC TGGGCTACGC AAACGAGCTG AGGAGAAAGG CCAGGTAGGT AGGTTGGTAG GAGTGGCTAT GAGCAGCGCA  GTGCCAGCGC AGTGGAGGAT TCGGTCGTGT ACACTTGCAG CTCCTTTGTG CATAGTGGAA AGAGACTCTC GTGATTTTGC TCACCTGCAA TTGTGGACTG GTCCGACTCA CTTCAGTGTA  CATGAAGAAA CTGTTGCCGC AAGAGCTGAG TCCAGTCAAG GCCCTGGTGG TCCTAATTGA GGTGTGAAGG GTCGTGATAC ATGGACACCA GCATTGCTCT GTCAGCAGCA GTGTGAGGGG 
GGCAAGCGCA CACTGGCTTT ATGGCTTGGC TGTAACTGTG CGGAAGAATC CCTGGCAGGA CATTGTGGAA GGTACATTGG AAGACTGAAA CATCTGTGAG AA 

Retrieve as FASTA