Entry information : PmargAPx-R
Entry ID 7759
Creation 2010-11-05 (Qiang Li)
Last sequence changes 2010-12-23 (Qiang Li)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2012-06-13 (Christophe Dunand)
Peroxidase information: PmargAPx-R
Name PmargAPx-R
Class Ascorbate peroxidase related     [Orthogroup: APx-R001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Zygnemophyceae Peniaceae Penium
Organism Penium margaritaceum    [TaxId: 102169 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmargAPx-R
start..stop
S start..stop
CochAPx-R01 292 3e-100 77..304 1..229
LeAPx-R 294 1e-99 54..303 76..322
MbraAPx-R01 280 2e-95 77..303 1..228
GrAPx-R 283 3e-95 76..305 105..333
Literature and cross-references PmargAPx-R
Literature Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. Broad phylogenomic sampling and the sister lineage of land plants. PLoS ONE 7 (1), e29696 (2012).
EST ref. GenBank:   HO582663.1 [3' end]
Protein sequence: PmargAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   305
PWM (Da):   %s   32150.09  
PI (pH):   %s   4.65
Sequence
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Send to Peroxiscan
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PAFTSTAFNS IGASVxIPFN STLQDDETLS SAGVRYTAPA VFSSSSSSSS STSIGPAERH GGEIATVAAE DSVERQIREA VRKVVTRAKA PGVLRLAFHD AGTYDLDTNT GGANGSILFE  LERPESNGLK RYTKVLTKAK KDLEASGVQV SWADLIAVAG AQAVEMSGGP HIGVRVGRPD ALVADEEGRM PAETFDADQV FASFAGKGFS VRETVVLLGG HTLGGKGFGD PTVFDNSYFT 
VLLQRPWEAS PAMGSMIGLP SDRALLKSDD AVRWIETYAS DQQLFFDDFV AAYTKMVENG VQWST 

Retrieve as FASTA  
Remarks Partial sequence from 1 EST. 5' end is missing. Strain="SKD-2004, CL-18".
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ACCAAGGTTC TCCATGCGCA ATGGGCATCA AAGATCGCAG CTGCCAAACT TCGCCAGCAG CCTCAACCAC GGCCTACCAC CGGGAAAAGA CGGCCCCTCG TGCTGAAAGC CACTCTGTAC  AACACCCGGT CCGGAATTCC CGGGAGTCTG CCACGCAAGC TGCGCACCTA CCTTGTCTTG GCCAGAATTA AATCAAGGGC CGGTTCAAGA CCTGGAGAGC CGAATTTGCG CCAGCGACAT  TGTCCCGCAC AGGTTGCTCC GCGCGCCAAC AGCACTGACA GCGGATGTAA TTCCGCGATC AGCGCATCCA GCTGGCCGCC CCGTGCGATT GGTTGTCTGC CCCCTTGTAG AACCGAGGTG  CTGACAAAAG CCAAGAAAGA TCTGGAGGCT TCTGGCGTGC AGGTGTCGTG GGCTGACCTC ATCGCGGTAG CGGGGGGCAG AGGCAGTGGA GATGAGCGGA GGGCCACACA TTGGCGTGCG  AGTTGGCCGT CCCGACGCAC TGGTGGCAGA CGAGGACGGA TGCCAGCGGA GACGTTTTGA CGCCGACCAA GTCTTTGCGA GCTTTGCTGG AAAAGGTTTC AGTGTGAGAG AGACGGTGGT  TCTACTCGGA GGTCACACGC TTGGTGGGAA AGGCTTCGGC GACCCTACTG TGTTCGACAA CTCCTACTTC ACCGTGCTGC TGCAGCGGCC GTGGGAGGCT GCTGGCTCGT CTGCTGACGC  ACGCAGCCCG GTTGCTGGCG CAGCAGGCGG CCACAGCAGT GGCATGGCGA TGAGCCCTGC AATGGGCAGC ATGATTGGTC TGCCGTCCGA CAGAGCGCTA CTGAAGAGCG ACGATGCTGT  GAGGTGGATC GAGACGTACG CATCAGACCA ACAACTCTTC TTTGACGACT TTGTTGCGGC GTACACCAAG ATGGTGGAGA ATGGGGTGCA GTGGTCGACT TGAGTCCCTC ACGGGTACAG  ACCATGTTCG GCATCGCCTT ACGCTTGCTC GTGGAAGACG ACGTATTGTG CACCAGCACA AGACCACACC ATGGCATGGA ACAAGCCACA CCGTGGCATG GTACAAGTTC TCTCTCTTCA  GGAGTTCGCG CAAAAGGGCA ACACAAAAGC TAAGCCATGT CATGCAAATG CAAAAGATTT GTGAGGCCTA GCCTTCAGTT GCAATCTTGG GGTGATATGT TGATGAGAAG ATTTGCGACT  TGGTTGCGGG TCAAAGCCTG GTTGTGAGTT CGCCTCTCAC AGTAGTTTTC TAGCCTTTGC GTGACAAGTT CCCCAAAGGA AAATACGAAT GTATCCCTTT CTTGGAATGT TAAGCAAAGT 
CGCCTCAGCT CTC 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CCTGCTTTCA CTTCGACGGC TTTCAACTCC ATTGGGGCTT CCGTCnGCAT TCCCTTCAAC AGCACTTTGC AAGACGACGA GACGTTGAGC AGTGCAGGTG TGCGCTACAC TGCGCCAGCT  GTCTTCAGCA GCAGCAGCAG CAGCAGCAGC AGCACAAGCA TCGGACCGGC CGAGAGGCAT GGTGGAGAAA TTGCAACGGT TGCGGCGGAG GATTCTGTGG AGCGGCAAAT ACGCGAGGCG  GTGCGAAAGG TGGTGACTCG TGCGAAGGCG CCTGGTGTGC TTCGGCTTGC TTTTCACGAC GCTGGAACGT ACGACCTTGA CACAAACACA GGCGGTGCGA ATGGCTCCAT CTTGTTTGAG  CTCGAGCGGC CAGAGAGCAA CGGCCTCAAA CGATACACCA AGGTGCTGAC AAAAGCCAAG AAGGATCTGG AGGCCTCTGG CGTGCAGGTG TCATGGGCTG ACCTCATCGC GGTAGCCGGG  GCACAGGCAG TGGAGATGAG TGGAGGCCCA CACATTGGCG TGCGAGTTGG CCGTCCTGAC GCACTGGTGG CAGACGAGGA GGGGCGCATG CCAGCGGAGA CGTTTGACGC TGACCAAGTC  TTCGCGAGCT TTGCTGGAAA AGGTTTCAGC GTGAGAGAGA CGGTGGTTCT ACTCGGAGGC CACACGCTTG GTGGGAAAGG CTTCGGCGAC CCTACTGTGT TCGATAACTC CTACTTCACC  GTGCTGCTGC AGCGGCCCTG GGAGGCGAGC CCTGCGATGG GCAGCATGAT TGGTCTGCCG TCCGACAGAG CGCTACTGAA GAGCGATGAT GCTGTGAGGT GGATCGAGAC GTACGCATCA 
GACCAACAAC TCTTCTTTGA CGACTTTGTT GCGGCGTACA CCAAGATGGT GGAGAATGGG GTGCAATGGT CGACTTGA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGGATGACGA AAGCGCTCGT CTTTCCTTTT CCTGCGCGTG CGGTCTTTCG ACCAGTCGCT CTCACAGCTG CAATCTCACA CGTGGCGAGT GATGCTGTCG CATCCAACTG CAGCTCTCTC  TTGTCTAACG AACCATCCGG CAATGGTGGC TGTCGGCGTC TCCTCCACAG CAGCAGCTGC GGCAACAGCA ACAGCAACAG CAGCATCAGC AGCAGCAGCA TCCCCCGCGT CTGCACCGAA  GTCTGCATGC CGCGCATCTT TGCCGGGCGT ATCGCAAGCG AGAGGCCAAG CGCAAnCGCA AGCGCAAGCG AAAACTGCGA GCCGGCGGAA AGCTCATCAC GGCGAAGCAA ATGAnTCGGA  GGTTGGCAAG ACACGCACAA GCTGCGCACA TCTAGGAACA GTCGCTACTG CTGCTGCCGC TGCAGCTGCG TGCnCGAACA GCAGCGAGGA TGGGCAGCAA GTGCATGCGA GTTGCGCGTG  GGCCACCACG GCGAACGTGC ACGCTGTGAG ACAGCACACA GCGGCTGTGG CGTTGGCGTG CCTCTGCTGG AACATCCCAC CTGCCGCGCT TGCGGCGCAG TTGGCGTGTG CATCGCTCAC  TCCAAGCAAT GGGACGTACT TGGTGGACGA AGCAGTTGAC TGGCAGCATG CGCAACTTGT GCCTGCTTTC ACTTCGACGG CTTTCAACTC CATTGGGGCT TCCGTCnGCA TTCCCTTCAA  CAGCACTTTG CAAGACGACG AGACGTTGAG CAGTGCAGGT GTGCGCTACA CTGCGCCAGC TGTCTTCAGC AGCAGCAGCA GCAGCAGCAG CAGCACAAGC ATCGGACCGG CCGAGAGGCA  TGGTGGAGAA ATTGCAACGG TTGCGGCGGA GGATTCTGTG GAGCGGCAAA TACGCGAGGC GGTGCGAAAG GTGGTGACTC GTGCGAAGGC GCCTGGTGTG CTTCGGCTTG CTTTTCACGA  CGCTGGAACG TACGACCTTG ACACAAACAC AGGCGGTGCG AATGGCTCCA TCTTGTTTGA GCTCGAGCGG CCAGAGAGCA ACGGCCTCAA ACGATACACC AAGGTGCTGA CAAAAGCCAA  GAAGGATCTG GAGGCCTCTG GCGTGCAGGT GTCATGGGCT GACCTCATCG CGGTAGCCGG GGCACAGGCA GTGGAGATGA GTGGAGGCCC ACACATTGGC GTGCGAGTTG GCCGTCCTGA  CGCACTGGTG GCAGACGAGG AGGGGCGCAT GCCAGCGGAG ACGTTTGACG CTGACCAAGT CTTCGCGAGC TTTGCTGGAA AAGGTTTCAG CGTGAGAGAG ACGGTGGTTC TACTCGGAGG  CCACACGCTT GGTGGGAAAG GCTTCGGCGA CCCTACTGTG TTCGATAACT CCTACTTCAC CGTGCTGCTG CAGCGGCCCT GGGAGGCGAG CCCTGCGATG GGCAGCATGA TTGGTCTGCC  GTCCGACAGA GCGCTACTGA AGAGCGATGA TGCTGTGAGG TGGATCGAGA CGTACGCATC AGACCAACAA CTCTTCTTTG ACGACTTTGT TGCGGCGTAC ACCAAGATGG TGGAGAATGG  GGTGCAATGG TCGACTTGAG TCCCTCACGG GTACAGACCA TGTTCGGCAT CGCCTTACGC TTGCTCGTGG AAGACTACGT ATTGTGCACC AGCACAGGAC CACACCATGG CATGGAACAA  GCCACACCGT GGCGTGGTAC AAGTTCTCTC TCTCCAGGAG TTCGCGCAAA AGGGCAACAC AAAAGCTAAG CCATGTCATG CAAATGCAAA AGATTTGTGA GGCCTATGAG GCCTAGCCTT  CAGTTGCAAT CTTGGGGTGA TATGTTGATG AGAAGATTTG CTACTTGGTT GCGGGTCAAA ACCTGGTTGT GAGTTCGCCT CTCACAGTAG TTTTCTAGCC TTTGCGTGAC AAGTTCCCCA  AAGGAAAATA CAAATGCATC CCTTTCTTGG AATTTTAAGC AAAGTCGCCT CAGCTACTAA TTGATGTTAA TGCCAGCAAC CCCTGTGAGT TATGGGTGTA TCACATGCAA GTGACCTCTC  GACTCTACTC ACACATACAC ACCATCACTG TAGGTGCTTG ACCTAGATTA TATCTTGAAT GCAAAGCTGT GATGCATCAT GGAGCGCATA GTGGTGGTGA CACCATCAAG CTGCCAAGTG 
GTGGTCTTAA CACCAACACC ACATTCATGG AGAGCTTGAT TGTAGTGATG TTTCATGCTT TTTACATTCG AGAATGGGGC ACACATTCAT GGGAGT 

Retrieve as FASTA