Entry information : PmargAPx01
Entry ID 7760
Creation 2010-11-05 (Qiang Li)
Last sequence changes 2010-11-26 (Qiang Li)
Sequence status partial
Reviewer Christophe Dunand
Last annotation changes 2012-06-13 (Christophe Dunand)
Peroxidase information: PmargAPx01
Name PmargAPx01
Class Ascorbate peroxidase     [Orthogroup: APx002]*
Taxonomy Eukaryota Viridiplantae Streptophyta Zygnemophyceae Peniaceae Penium
Organism Penium margaritaceum    [TaxId: 102169 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmargAPx01
start..stop
S start..stop
RobtAPx04 554 0 73..406 1..337
SsAPx04_AU1 542 0 32..408 37..421
CbrebAPx07 526 0 73..406 1..338
GbAPx04 514 0 43..406 33..407
Literature and cross-references PmargAPx01
Literature Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. Broad phylogenomic sampling and the sister lineage of land plants. PLoS ONE 7 (1), e29696 (2012).
EST ref. GenBank:   HO583450.1   HO611621.1   HO628950.1
Protein sequence: PmargAPx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   408
PWM (Da):   %s   43750.28 Transmb domain:   %s   o385-407i
PI (pH):   %s   8.63
Sequence
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Send to Peroxiscan
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TTMAASAMRC ATAAATCCQR AQMMSASALP AATRAALSSS FVPKGLVALP VRTFSQGSSG QRRIFQRGLA VRAAADVEQL RGAKEAIKEL IQSKHCTPIL IRLGWHDSGT YDKNVSGWPA  AGGATASIRF KPEIDHAANA GLASALALLA PIKEKYPAVS YSDLFQLASA TAVEVAGGPK IPMKYGRVDA DSPKDCSPEG NLPDAGPPSP ADHLRKVFYR MGLNDKEIVA LSGAHTLGRA  RPERSGWGKA ETKYTKDGPG LPGGQSWTVD WLKFDNSYFK DVKEKKDADL LVLPTDAALF EDAEFKKYAE LYAADQDAFF ADYADAHKKL SELGSKFDPP EGVYLPEKFS AAEYSSKSNI 
SNEMKERLRK EYVSFGGSPN QPLQSNYFLN IIIAVSVLAV LAWLTGAI 

Retrieve as FASTA  
Remarks Partial sequence from 3 ESTs. Short 5' is missing. Strain="SKD-2004, CL-18".
CDS
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ACCACCATGG CGGCGTCCGC AATGCGGTGC GCGACAGCTG CAGCCACGTG CTGCCAACGC GCTCAGATGA TGTCGGCGTC CGCGCTCCCA GCGGCTACTC GCGCCGCCCT GTCATCCTCC  TTCGTCCCCA AGGGACTCGT TGCGCTCCCG GTGCGGACTT TCAGCCAGGG CAGCAGCGGC CAACGCCGCA TTTTCCAGCG GGGGCTGGCG GTGCGTGCAG CGGCAGACGT GGAGCAGCTG  CGGGGCGCAA AGGAAGCCAT CAAGGAGCTC ATTCAGAGCA AGCACTGCAC CCCTATCCTC ATTCGGCTGG GCTGGCACGA CTCTGGCACG TACGACAAGA ACGTGTCCGG CTGGCCCGCG  GCCGGCGGTG CGACCGCAAG CATTCGCTTC AAGCCTGAGA TAGACCACGC TGCTAACGCA GGTCTGGCCA GCGCTCTCGC CCTCCTCGCA CCCATCAAGG AGAAGTACCC CGCCGTCAGC  TACTCTGACC TCTTCCAGCT TGCCAGCGCC ACCGCCGTCG AGGTCGCTGG TGGTCCAAAG ATCCCAATGA AGTATGGCCG AGTGGACGCA GACAGCCCCA AGGACTGCTC GCCCGAGGGC  AACCTGCCTG ACGCCGGCCC TCCCTCCCCT GCTGACCACC TTCGCAAGGT GTTCTACCGC ATGGGCCTCA ACGACAAGGA AATTGTGGCA CTGTCGGGCG CACACACTCT TGGCCGAGCC  CGTCCTGAAC GCAGCGGCTG GGGTAAAGCT GAGACCAAGT ACACAAAGGA TGGACCGGGC CTTCCAGGTG GGCAGTCGTG GACGGTTGAC TGGCTCAAGT TCGACAACTC CTACTTCAAG  GATGTGAAGG AGAAGAAGGA TGCGGACCTT CTTGTTCTGC CCACTGACGC TGCTCTCTTT GAGGACGCAG AGTTCAAGAA ATACGCCGAG CTGTACGCAG CAGACCAGGA CGCCTTCTTC  GCCGACTACG CCGACGCCCA CAAGAAGTTG AGCGAGCTTG GATCCAAGTT CGACCCGCCT GAGGGAGTGT ACTTGCCAGA GAAGTTTTCC GCCGCAGAGT ACTCCTCAAA GAGCAACATC  TCGAACGAGA TGAAGGAGAG GCTGCGGAAG GAGTATGTCT CGTTTGGGGG CAGTCCCAAT CAGCCCCTGC AGAGCAACTA CTTTCTCAAC ATCATCATTG CAGTCAGCGT TCTTGCCGTC 
CTTGCCTGGC TGACCGGGGC GATCTGA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ACCACCATGG CGGCGTCCGC AATGCGGTGC GCGACAGCTG CAGCCACGTG CTGCCAACGC GCTCAGATGA TGTCGGCGTC CGCGCTCCCA GCGGCTACTC GCGCCGCCCT GTCATCCTCC  TTCGTCCCCA AGGGACTCGT TGCGCTCCCG GTGCGGACTT TCAGCCAGGG CAGCAGCGGC CAACGCCGCA TTTTCCAGCG GGGGCTGGCG GTGCGTGCAG CGGCAGACGT GGAGCAGCTG  CGGGGCGCAA AGGAAGCCAT CAAGGAGCTC ATTCAGAGCA AGCACTGCAC CCCTATCCTC ATTCGGCTGG GCTGGCACGA CTCTGGCACG TACGACAAGA ACGTGTCCGG CTGGCCCGCG  GCCGGCGGTG CGACCGCAAG CATTCGCTTC AAGCCTGAGA TAGACCACGC TGCTAACGCA GGTCTGGCCA GCGCTCTCGC CCTCCTCGCA CCCATCAAGG AGAAGTACCC CGCCGTCAGC  TACTCTGACC TCTTCCAGCT TGCCAGCGCC ACCGCCGTCG AGGTCGCTGG TGGTCCAAAG ATCCCAATGA AGTATGGCCG AGTGGACGCA GACAGCCCCA AGGACTGCTC GCCCGAGGGC  AACCTGCCTG ACGCCGGCCC TCCCTCCCCT GCTGACCACC TTCGCAAGGT GTTCTACCGC ATGGGCCTCA ACGACAAGGA AATTGTGGCA CTGTCGGGCG CACACACTCT TGGCCGAGCC  CGTCCTGAAC GCAGCGGCTG GGGTAAAGCT GAGACCAAGT ACACAAAGGA TGGACCGGGC CTTCCAGGTG GGCAGTCGTG GACGGTTGAC TGGCTCAAGT TCGACAACTC CTACTTCAAG  GATGTGAAGG AGAAGAAGGA TGCGGACCTT CTTGTTCTGC CCACTGACGC TGCTCTCTTT GAGGACGCAG AGTTCAAGAA ATACGCCGAG CTGTACGCAG CAGACCAGGA CGCCTTCTTC  GCCGACTACG CCGACGCCCA CAAGAAGTTG AGCGAGCTTG GATCCAAGTT CGACCCGCCT GAGGGAGTGT ACTTGCCAGA GAAGTTTTCC GCCGCAGAGT ACTCCTCAAA GAGCAACATC  TCGAACGAGA TGAAGGAGAG GCTGCGGAAG GAGTATGTCT CGTTTGGGGG CAGTCCCAAT CAGCCCCTGC AGAGCAACTA CTTTCTCAAC ATCATCATTG CAGTCAGCGT TCTTGCCGTC  CTTGCCTGGC TGACCGGGGC GATCTGAGGG AGATCAGTCG CTTTGCCTCT GGCCATCAGG GCACCTTTTT GATACTCATC ACAGCGGGCT TTTTCCTCTG GAGGGCAGTT TTGGATCCGA  TGTACCCTGG GAGGAATGTT ATCCATCGTG GACATGCATG TCTCATCTAC GAACCTCACA ATGCATAGTC TGGTTCCCTC GCTCACACCC CTCGCATGGG GAAGACCTCC GAGTCGCCCT  ACTCCATAAT GACCACTTCT TCATGTACTC TACACTTGCA GGCTTGAGCC TTTTCTATTA TGGCAGCACC TCCGGTCGCT TCTCCGAACT CTCGTTGACC ATGTGGACAG TTACCACCAT 
GGTAGCAAAA CACCAGTTCC CAGGGTTTGG TGATATGCGA TTGTGTGGTA TTACAATTAT TCACCAAG 

Retrieve as FASTA