Entry information : PmargAPx04
Entry ID 7766
Creation 2010-11-08 (Qiang Li)
Last sequence changes 2010-12-23 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2012-06-13 (Christophe Dunand)
Peroxidase information: PmargAPx04
Name PmargAPx04
Class Ascorbate peroxidase    [Orthogroup: APx004]
Taxonomy Eukaryota Viridiplantae Streptophyta Zygnemophyceae Peniaceae Penium
Organism Penium margaritaceum    [TaxId: 102169 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PmargAPx04
start..stop
S start..stop
CpslAPx05 329 1e-111 72..369 63..358
GbAPx05 308 2e-103 75..368 63..354
MbraAPx04 303 5e-103 103..364 1..262
SpraAPx02 300 2e-100 61..369 44..350
Literature and cross-references PmargAPx04
Literature Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. Broad phylogenomic sampling and the sister lineage of land plants. PLoS ONE 7 (1), e29696 (2012).
EST ref. GenBank:   HO581023.1   HO581395.1   HO635408.1
Protein sequence: PmargAPx04
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   369 (350)
PWM (Da):   %s   38831.34 (37273.6)  
PI (pH):   %s   8.97 (8.97) Peptide Signal:   %s   cut: 20 range:20-369
Sequence
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Send to Peroxiscan
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MAASSAVVLG ASAAASAAAL SSSVSWRPAA KPHTRKAAVL VCSASSQQQQ QEEGAKDVGS CISNTSASAA AAVGRRQALL AATVAASAAA AWAPAVVLPQ PAEAADIVQR QQRSFFLGKL  QKALRAEVEA NQDLIPALLR LAINDAASYD KASKTGGPNG SIRLDEELGR PENKALKSAL DLLARAKAAA EAEVPQSGTL SYADVIQFGG QAAAKRLFRL AAIRKAGGDE KKGTDLYRAI  GSEGQWGAFD KLFGREDAAE ADPAGRVPVW DQLSPAELKD KFASLGLKPR QIVPLTVFLS DDAQALEEKL AQDPEFEPLV TKYRKSRNTV SQTDYEVDLI QSFIRLASLG PPVNTEAYTY 
APKRPNFKF 

Retrieve as FASTA  
Remarks Complete sequence from 3 ESTs. Strain="SKD-2004, CL-18".
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTGCCT CTTCCGCAGT GGTGTTGGGT GCGTCAGCCG CAGCGTCGGC GGCTGCACTC AGCAGCAGCG TCAGCTGGAG ACCTGCCGCT AAGCCACACA CGAGGAAGGC GGCGGTGCTA  GTGTGCAGCG CGTCTTCACA GCAGCAGCAG CAGGAGGAGG GGGCGAAAGA TGTTGGCAGC TGCATCAGCA ACACCTCTGC TTCTGCAGCA GCAGCTGTCG GTCGCAGGCA AGCGCTGCTG  GCTGCCACTG TGGCTGCATC GGCCGCTGCT GCGTGGGCGC CTGCTGTGGT GCTGCCGCAG CCTGCTGAGG CGGCGGACAT TGTCCAACGG CAGCAGAGGT CCTTCTTCCT GGGTAAGCTC  CAGAAGGCGC TCAGAGCTGA AGTGGAGGCA AATCAGGATC TGATTCCAGC GCTTCTCCGT CTGGCCATCA ACGATGCAGC CTCCTATGAC AAGGCCTCCA AGACTGGCGG CCCAAACGGC  TCCATCCGTC TCGATGAAGA GCTGGGAAGG CCAGAGAACA AGGCACTGAA GTCAGCGTTG GATCTGTTGG CACGAGCGAA GGCAGCAGCG GAGGCAGAGG TGCCACAGAG CGGAACnCTC  TCGTACGCTG ATGTCATCCA ATTCGGAGGC CAAGCnGCGG CGAAGCGGTT GTTCCGCTTG GCGGCCATCC GCAAGGCAGG CGGGGATGAG AAGAAGGGCA CCGACCTGTA CCGCGCCATT  GGGTCAGAAG GGCAGTGGGG CGCGTTTGAC AAACTGTTTG GGCGTGAGGA CGCCGCTGAG GCAGACCCTG CTGGCCGCGT GCCTGTGTGG GACCAACTCA GCCCTGCTGA ACTGAAGGAC  AAGTTTGCCT CGCTTGGGCT AAAACCTCGC CAGATAGTGC CACTGACCGT GTTTCTGTCG GACGACGCTC AAGCGCTGGA GGAGAAGTTG GCGCAGGATC CCGAGTTTGA GCCGCTGGTC  ACAAAGTACA GAAAGAGCCG AAACACCGTC TCGCAGACGG ACTACGAGGT TGACCTCATC CAATCATTCA TCAGGCTTGC CTCTTTGGGT CCGCCGGTCA ACACTGAAGC GTACACGTAC 
GCACCGAAGC GGCCCAATTT CAAGTTCTGA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CGCCTCCACA TCCGCCGACA AGTCGATCCC TGCCTCGACC TGCGTTTCTG CCGACCCCTG CTGCAGCCGC CCGAGGTGAA TCACTTATGG CTGCCTCTTC CGCAGTGGTG TTGGGTGCGT  CAGCCGCAGC GTCGGCGGCT GCACTCAGCA GCAGCGTCAG CTGGAGACCT GCCGCTAAGC CACACACGAG GAAGGCGGCG GTGCTAGTGT GCAGCGCGTC TTCACAGCAG CAGCAGCAGG  AGGAGGGGGC GAAAGATGTT GGCAGCTGCA TCAGCAACAC CTCTGCTTCT GCAGCAGCAG CTGTCGGTCG CAGGCAAGCG CTGCTGGCTG CCACTGTGGC TGCATCGGCC GCTGCTGCGT  GGGCGCCTGC TGTGGTGCTG CCGCAGCCTG CTGAGGCGGC GGACATTGTC CAACGGCAGC AGAGGTCCTT CTTCCTGGGT AAGCTCCAGA AGGCGCTCAG AGCTGAAGTG GAGGCAAATC  AGGATCTGAT TCCAGCGCTT CTCCGTCTGG CCATCAACGA TGCAGCCTCC TATGACAAGG CCTCCAAGAC TGGCGGCCCA AACGGCTCCA TCCGTCTCGA TGAAGAGCTG GGAAGGCCAG  AGAACAAGGC ACTGAAGTCA GCGTTGGATC TGTTGGCACG AGCGAAGGCA GCAGCGGAGG CAGAGGTGCC ACAGAGCGGA ACnCTCTCGT ACGCTGATGT CATCCAATTC GGAGGCCAAG  CnGCGGCGAA GCGGTTGTTC CGCTTGGCGG CCATCCGCAA GGCAGGCGGG GATGAGAAGA AGGGCACCGA CCTGTACCGC GCCATTGGGT CAGAAGGGCA GTGGGGCGCG TTTGACAAAC  TGTTTGGGCG TGAGGACGCC GCTGAGGCAG ACCCTGCTGG CCGCGTGCCT GTGTGGGACC AACTCAGCCC TGCTGAACTG AAGGACAAGT TTGCCTCGCT TGGGCTAAAA CCTCGCCAGA  TAGTGCCACT GACCGTGTTT CTGTCGGACG ACGCTCAAGC GCTGGAGGAG AAGTTGGCGC AGGATCCCGA GTTTGAGCCG CTGGTCACAA AGTACAGAAA GAGCCGAAAC ACCGTCTCGC  AGACGGACTA CGAGGTTGAC CTCATCCAAT CATTCATCAG GCTTGCCTCT TTGGGTCCGC CGGTCAACAC TGAAGCGTAC ACGTACGCAC CGAAGCGGCC CAATTTCAAG TTCTGAGGTG  CTCCTCGTAC AACAAATGAA TCGACTCGCT CATGCAGGAC CATTTTTGCC TTTCCTATAC CAAGAACACG ATATTCACAT TTCAAATGGT TTTGTTGTCG TGTACTATCC GTGGTCTGTG 
AAGTGGAGTT CTTAGATCTC ATCCAAGTGA ACCCTAATTG GCTTTTTGAG TAAGCTTGTT CGTTGACCG 

Retrieve as FASTA