Entry information : FspPxc01
Entry ID 7778
Creation 2010-11-29 (Marcel Zamocky)
Last sequence changes 2016-03-02 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2016-03-02 (Achraf Jemmat)
Peroxidase information: FspPxc01
Name FspPxc01
Class Bacterial peroxicin    [Orthogroup: Pxc001]
Taxonomy Bacteria Actinobacteria Actinobacteria (class) Frankiaceae Frankia
Organism Frankia sp.    [TaxId: 1855 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value FspPxc01
start..stop
S start..stop
RsphPxc01_241 334 8e-108 90..592 32..558
RsphPxc01_ATCC17029 327 4e-105 90..592 32..558
CsePxc01 318 1e-101 101..592 69..580
LspPxc01 290 3e-91 46..591 24..529
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 17577..19364 1788  
join(17577..19364)


exon

Literature and cross-references FspPxc01
Literature Lucas S., Copeland A. et al. The draft genome of Frankia sp. (Unpublished in 2010)
Protein ref. GenBank:   EFC85919.1 UniProtKB:   D3CTM9
DNA ref. GenBank:   ADGX01000010.1 (19364..17577)
Protein sequence: FspPxc01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   595
PWM (Da):   %s   62811.06  
PI (pH):   %s   4.81
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTPSAADHRI LRAVHHARQI PPDDASGDTG GAGGTGGDSA TPGQLELATS TPFDFLFAGL AANFPDHHLQ GDPAVVRAAL ERLGNALTEP STAADGGQAV AGTSPVAGAQ VDGPAGNSTI  PPVYTYWGQF TDHDLTLNTG ANSTLIGVAN GPVTPLLPTA VANSLRNGRQ PALDLDSVYG GGPVFDDAGA ATATATETET PDDLYDGVRL RLGRVAEANN DGSRPAGDPI PLAADGLHDL  PRDGSVALVG DGRNDENLIV AQFHVAFLRF HNAVVDWVLA HEPYLATDRE VFNRARDLVR WHYQWLVVHD YLKTVALPGV TDKVLLSGPQ HFAPRAGKVF MPLEFSAAAF RFGHSMVRAA  YDYNQNFGRA GGGKGKVLDN APFSLLFSFT GGANPPFVGR TSVLPFNWVI EWDRFVDKGS PKPDHFARKI DTRLAPPLFD LINEIGPAQG VVPADAEILK RLAVRNLLRG YQLALPTGQA 
VAGALGVTPL TADELLQGNS DEVSAALTDG GFLQATPLWY YILKEAEVRA NGNSLGEVGS RIVVETLIGQ LRLDPGSYLN QDNGWSPEQG VLLPNGDPIV TIKDLFVFAG VLTGP 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Strain="EUN1f".
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TCACGGCCCG GTGAGCACAC CGGCGAACAC GAACAGATCC TTGATGGTGA CGATTGGATC ACCGTTCGGC AGGAGGACAC CCTGCTCGGG GCTCCAGCCG TTGTCCTGGT TCAGATAGGA  GCCGGGGTCC AGGCGTAGCT GGCCGATCAG GGTCTCGACG ACGATCCGGC TGCCGACCTC GCCGAGTGAG TTTCCGTTCG CCCGTACCTC GGCCTCCTTA AGGATGTAGT ACCAGAGCGG  GGTCGCCTGC AGGAAACCCC CGTCCGTCAG CGCGGCGCTC ACCTCGTCGC TGTTTCCCTG CAGCAGTTCG TCCGCGGTCA GCGGCGTGAC ACCGAGGGCG CCCGCGACGG CCTGCCCGGT  GGGCAGGGCG AGCTGGTATC CGCGCAGCAG ATTGCGTACG GCGAGCCTCT TGAGGATCTC CGCGTCGGCG GGCACGACCC CCTGCGCGGG GCCGATCTCG TTGATGAGGT CGAACAGCGG  CGGGGCCAGC CGGGTGTCGA TCTTGCGGGC GAAGTGGTCG GGCTTGGGGG ATCCCTTGTC CACGAAACGA TCCCACTCGA TCACCCAGTT GAAGGGAAGG ACACTGGTGC GCCCGACAAA  CGGCGGGTTG GCGCCTCCCG TGAAGCTGAA GAGGAGGCTG AAGGGTGCGT TATCAAGTAC CTTCCCTTTC CCGCCTCCCG CCCGACCGAA GTTCTGGTTG TAGTCGTAGG CGGCCCGTAC  CATGCTGTGC CCGAAACGAA AGGCGGCGGC CGAGAACTCG AGTGGCATGA AGACCTTGCC CGCCCTCGGA GCGAAATGCT GCGGGCCACT CAGCAGAACC TTGTCCGTGA CGCCGGGCAG  CGCCACCGTC TTCAGATAGT CGTGGACGAC GAGCCACTGG TAGTGCCAGC GCACCAGATC GCGGGCCCGG TTGAAGACCT CCCGGTCGGT TGCGAGGTAC GGCTCGTGCG CGAGCACCCA  GTCGACCACC GCGTTGTGGA AACGGAGAAA AGCGACGTGG AACTGCGCGA CTATCAGGTT CTCGTCGTTG CGCCCGTCTC CGACGAGCGC CACCGAGCCG TCCCGGGGCA GGTCGTGCAG  GCCGTCGGCC GCGAGCGGTA TGGGATCGCC CGCCGGCCGC GATCCGTCGT TGTTGGCCTC GGCCACGCGG CCGAGCCGCA GCCTCACCCC GTCGTACAGG TCGTCCGGGG TCTCCGTCTC  CGTTGCCGTT GCCGTTGCCG CGCCGGCGTC GTCGAAGACA GGTCCGCCAC CGTAGACGGA GTCGAGGTCG AGGGCCGGTT GCCGGCCGTT GCGGAGACTG TTGGCCACCG CCGTGGGCAG  CAGTGGAGTG ACCGGCCCGT TGGCGACGCC GATGAGGGTG CTGTTGGCGC CGGTGTTCAG GGTGAGGTCG TGATCGGTGA ACTGGCCCCA GTAGGTGTAG ACGGGCGGGA TCGTGCTGTT  TCCCGCCGGT CCGTCCACCT GCGCTCCGGC GACCGGCGAT GTTCCGGCAA CCGCCTGCCC CCCGTCCGCG GCGGTACTCG GCTCGGTCAG GGCGTTTCCC AGCCGTTCGA GGGCTGCCCG  CACGACGGCC GGGTCGCCCT GGAGGTGGTG GTCGGGAAAG TTCGCGGCCA GACCGGCGAA GAGGAAGTCG AAGGGGGTTG AAGTCGCCAG TTCGAGTTGC CCGGGCGTAG CGGAATCGCC 
GCCCGTGCCG CCCGCGCCAC CAGTGTCCCC GGAAGCATCG TCGGGCGGTA TCTGGCGTGC ATGGTGAACT GCCCGCAGGA TGCGGTGGTC TGCGGCCGAC GGTGTCAT 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TCACGGCCCG GTGAGCACAC CGGCGAACAC GAACAGATCC TTGATGGTGA CGATTGGATC ACCGTTCGGC AGGAGGACAC CCTGCTCGGG GCTCCAGCCG TTGTCCTGGT TCAGATAGGA  GCCGGGGTCC AGGCGTAGCT GGCCGATCAG GGTCTCGACG ACGATCCGGC TGCCGACCTC GCCGAGTGAG TTTCCGTTCG CCCGTACCTC GGCCTCCTTA AGGATGTAGT ACCAGAGCGG  GGTCGCCTGC AGGAAACCCC CGTCCGTCAG CGCGGCGCTC ACCTCGTCGC TGTTTCCCTG CAGCAGTTCG TCCGCGGTCA GCGGCGTGAC ACCGAGGGCG CCCGCGACGG CCTGCCCGGT  GGGCAGGGCG AGCTGGTATC CGCGCAGCAG ATTGCGTACG GCGAGCCTCT TGAGGATCTC CGCGTCGGCG GGCACGACCC CCTGCGCGGG GCCGATCTCG TTGATGAGGT CGAACAGCGG  CGGGGCCAGC CGGGTGTCGA TCTTGCGGGC GAAGTGGTCG GGCTTGGGGG ATCCCTTGTC CACGAAACGA TCCCACTCGA TCACCCAGTT GAAGGGAAGG ACACTGGTGC GCCCGACAAA  CGGCGGGTTG GCGCCTCCCG TGAAGCTGAA GAGGAGGCTG AAGGGTGCGT TATCAAGTAC CTTCCCTTTC CCGCCTCCCG CCCGACCGAA GTTCTGGTTG TAGTCGTAGG CGGCCCGTAC  CATGCTGTGC CCGAAACGAA AGGCGGCGGC CGAGAACTCG AGTGGCATGA AGACCTTGCC CGCCCTCGGA GCGAAATGCT GCGGGCCACT CAGCAGAACC TTGTCCGTGA CGCCGGGCAG  CGCCACCGTC TTCAGATAGT CGTGGACGAC GAGCCACTGG TAGTGCCAGC GCACCAGATC GCGGGCCCGG TTGAAGACCT CCCGGTCGGT TGCGAGGTAC GGCTCGTGCG CGAGCACCCA  GTCGACCACC GCGTTGTGGA AACGGAGAAA AGCGACGTGG AACTGCGCGA CTATCAGGTT CTCGTCGTTG CGCCCGTCTC CGACGAGCGC CACCGAGCCG TCCCGGGGCA GGTCGTGCAG  GCCGTCGGCC GCGAGCGGTA TGGGATCGCC CGCCGGCCGC GATCCGTCGT TGTTGGCCTC GGCCACGCGG CCGAGCCGCA GCCTCACCCC GTCGTACAGG TCGTCCGGGG TCTCCGTCTC  CGTTGCCGTT GCCGTTGCCG CGCCGGCGTC GTCGAAGACA GGTCCGCCAC CGTAGACGGA GTCGAGGTCG AGGGCCGGTT GCCGGCCGTT GCGGAGACTG TTGGCCACCG CCGTGGGCAG  CAGTGGAGTG ACCGGCCCGT TGGCGACGCC GATGAGGGTG CTGTTGGCGC CGGTGTTCAG GGTGAGGTCG TGATCGGTGA ACTGGCCCCA GTAGGTGTAG ACGGGCGGGA TCGTGCTGTT  TCCCGCCGGT CCGTCCACCT GCGCTCCGGC GACCGGCGAT GTTCCGGCAA CCGCCTGCCC CCCGTCCGCG GCGGTACTCG GCTCGGTCAG GGCGTTTCCC AGCCGTTCGA GGGCTGCCCG  CACGACGGCC GGGTCGCCCT GGAGGTGGTG GTCGGGAAAG TTCGCGGCCA GACCGGCGAA GAGGAAGTCG AAGGGGGTTG AAGTCGCCAG TTCGAGTTGC CCGGGCGTAG CGGAATCGCC 
GCCCGTGCCG CCCGCGCCAC CAGTGTCCCC GGAAGCATCG TCGGGCGGTA TCTGGCGTGC ATGGTGAACT GCCCGCAGGA TGCGGTGGTC TGCGGCCGAC GGTGTCAT 

Retrieve as FASTA