Entry information : BdiAPx05 (Bradi4g41180)
Entry ID 7891
Creation 2011-01-17 (Toky Ramarohetra)
Last sequence changes 2011-01-17 (Toky Ramarohetra)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2011-01-19 (Toky Ramarohetra (Scipio))
Peroxidase information: BdiAPx05 (Bradi4g41180)
Name (synonym) BdiAPx05 (Bradi4g41180)
Class Ascorbate peroxidase    [Orthogroup: APx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type Callus
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BdiAPx05
start..stop
S start..stop
TaAPx03 605 0 1..314 1..313
HvAPx05 604 0 1..314 1..312
SiAPx06 576 0 1..314 1..311
SbAPx06 564 0 1..314 1..313
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 45349922..45350008 87 N° 2 45350098..45350214 117 N° 3 45350611..45350731 121 N° 4 45350807..45350907 101
N° 5 45351006..45351093 88 N° 6 45351938..45352005 68 N° 7 45352101..45352187 87 N° 8 45352864..45352938 75
N° 9 45353019..45353096 78 N° 10 45353184..45353288 105 N° 11 45353376..45353393 18  
join(45349922..45350008,45350098..45350214,45350611..45350731,45350807..45350907 ,45351006..45351093,45351938..45352005,45352101..45352187,45352864..45352938,453 53019..45353096,45353184..45353288,45353376..45353393)


exon

Literature and cross-references BdiAPx05 (Bradi4g41180)
Literature Vogel,J.P., Gu,Y.Q., Twigg,P., Lazo,G.R., Laudencia-Chingcuanco,D., Hayden,D.M., Donze,T.J., Vivian,L.A., Stamova,B. and Coleman-Derr,D.
EST sequencing and phylogenetic analysis of the model grass Brachypodium distachyon.
Theor Appl Genet 113 (2), 186-195 (2006).
DNA ref. Phytozome 11:   Bd4 (45349922..45353393)
EST ref. GenBank:   DV470194.1 [5' end]
Protein sequence: BdiAPx05 (Bradi4g41180)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   314
PWM (Da):   %s   34298.51  
PI (pH):   %s   7.34
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAVHHHLLRRGLAGGSPLSPLRGLFLVSQELGRRQASSAAAGDAAAELRGAREDVRQLLKDKHCHPILVRLGWHDSGTYDKNISEWPKCGGANGSLRFEIELKHAANAGLVNALKLVQTIKDKYAGVTYADLFQLASATAIEAGGPKIPMIYGRVDVSAPEQCPPEGRLPAAGPPSPAEHLREVFYRMGLNDEIVALSGAHTLGRSRPERSGWGKPETKYTKNGPGATGGQSWTSQWLKFDNSYFKDVKERRDEDLLVLPTDAVLFEDPSFKIYAERYAEDQDTFFEDYAEAHAKLSNLGSKFDPPKGISLD*

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 4, 10 introns), 1 EST. Cultivar="Bd21".
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGTCCACCACCACCTCCTCCGCCGCGGGCTCGCCGGCGGGTCCCCCCTCAGCCCTCTCCGCGGCCTCTTCCTCGTATCCCAGGTACGCATGACCAGCTGCTCCCGCCCTCGTCCA
TCACTCCACGCTGACGCGTCGGTTCCTGACCCCTTCTTGGCCTTCCCTCCTCGAAGGAGCTCGGGCGGCGTCAGGCGAGCTCGGCGGCGGCGGGGGATGCGGCGGCTGAGCTGAGGGGCG
CGCGGGAGGACGTCAGGCAGCTGCTTAAGGACAAGCACTGCCACCCCATCCTG
GTATCGTACACACACACACAATCTTGCAATTTTTCATGGAAGAACGATCGCACGTTTTAAGCTTATT
CGAGTTCGAGCAGAGGAATGTCCGCGTTGGGCTTAAGAATAAAGATTATCTTCTGTCAGTTCAGAAATTTTGGTCACTTATGGTTTGCTATATGCTTAGTTCACTTACTTAATATGCTTG
TTATACAAGAGGAGGATGCTGTGAGTACTTATTGGGGCTGGGTGAACTAGTCTGTAGCATGTCCAATGCACAACTTTAATCCACTTGCTGTTCTTTGTTGTATGTGGATGGTCCCTGGTT
TTGCATTTTCTTGATCCAACGTTAAAACTGATGCACTCTCTCCAGATGCCTCTGTATGGCATTGTTTCCTGAACTGCTTCTGGTTTCAGGTTCGGTTGGGTTGGCACGACTCTGGCACTT
ATGACAAGAACATTAGCGAGTGGCCAAAGTGTGGTGGAGCGAATGGCAGCCTGAGATTTGAAATCGAGTTAAAGCATGCCGCTAATGCTG
GTAGTGCTTCTCCCCCTCTTGTAATCTTTT
GCTTCATATGATCAAGGGATGGTTCTTAGACTAATTGTACTGCAGGCCTTGTGAATGCTCTGAAGCTGGTTCAAACCATCAAGGACAAATATGCCGGTGTCACTTATGCAGATCTGTTTC
AGCTTGCCAGTGCTACTGCCATTGAG
GTCCTTCATGGCGCTTCAACCTACTGATGATGATCATCATAAAATGTTCTTTCTTTATATTAGCAATGATGTGATTGAATTGATTTCTCTCTTT
TCAGGAAGCTGGTGGCCCCAAAATCCCCATGATCTATGGAAGGGTTGATGTTTCTGCCCCTGAACAGTGCCCACCAGAGGGGAGACTCCCTGGTTAGTAACTAGTATCTATAACCCAACT
TACTCTATACGCCAATTTAGCTTATCTGGACATCTGTGTCTAGAGCTAGAATTTTACACTGCACCTTTAGTTCCATATGATATAATTTCTTCATCATATACTAACAAGATCTCAGTGATG
GAAGCTATGAATAATTATCTCGCAAACTTAAATGGATCACCGACCAAAACATTAACTAACAACCTCTCATCAAATTTGGACTGTGTTGTTTCCTAATTCCTGTGCTACTTCTCTCTGCTA
GGTTCCTAAAATATTAGTATAAACTTTGATGAGAACAGTACGGATACATGATGGACCTTCATTGTTCACGTGAAGGAAAATATACTCCCTCCGTTCCATAATTCTTGTCGAAATATTACA
TGTATCTAGACACTTTTTAGGAATAGATACATCCATTTTTGGTCAAATTTGAGACAAGAATTATGGAACGAAGGGAGTATTTAGCTAAAACATGTATTAAAAATTATCGCTATTCTTTAT
TCCATTTATTCATCTGTTTGATATAAACTTATGAGCTACCACATGCAATGTTTTAGAACTACCTCGTGGAGGTAATCTGCTTCAGGCTGACATGCCTCCTTGAGGATATCACCTGTATAT
AGGTGTTCATTTATCTGTAAGGTGCACTTTGGTGCACCCTATTCGAACACTAACAGAACATATTGATGCCATACCAACATCAACCTTGTAAAAAAAATGGACTACAGTGTTACATTTTTT
ATGCATGTTAGTGCTATAATATATTTTATGGTAGATTTAGTTATCAGCAACCAGCATTACTTACATGGTTATATTTATACTTTGCCACCATTCCAGCTGCTGGTCCGCCTTCACCTGCTG
AACATTTGCGGGAAGTATTCTACAGAATGGGCCTGAATGACAAG
GTATGCAAAGACTGCTTTATTCCACCTTTTAACTATTCTGTAGGAGTACAAGATAATTCTGCATTTTCTTGTCTCA
TTTGTTTTGTGATGTGTAGGAAATTGTTGCATTGTCAGGAGCACACACACTTGGACGGTCAAGACCAGAGCGCAGTGGCTGGGGTAAACCAGAAACAAAATACACTGTACGTAAATTACT
GCTGTAGCTCATTGTTCTCATTTTTTTCTTTGGACATGCTCATTGTTCTCATTCAAAAGATGCCTTATTTATTAAAACATTTGTCAGAGCACTAGCTGAATGACGCATGCACTGCTAGAG
TAACAGAAGTAATAAATATAAATTATGAATAATCCAACCACGTGGCATGATTGCCATTCAAATCCGACGGTTTCAAAATTAATTTACACTTACTTAGAAATGAAAAGGCTGGAAAATATT
TAGATTTTTTGATAAAAGTTAAGCAGCACTTCATTAGTTCCTTGCATATACACATCCTGCAAAAGCACGCTTACAGATTGCTATTTCGTGCTACGTGCTGCCAATGCATTTATTTTCATT
CGGACAAGAAATTGTCATGTGTTTTCTTTCCATGATTCACAAGAACAAACATAAGACATATTTTATTCGTGTACACCGCTAGTGGCATTTATCAATATTATTGTGTGTCTTCAACAGTGA
ATGAGCTATATGAAAATGAACTATATTCCTGTCACCATCACTAACTTCTCTACTACAGAGCTTATCTTTTTACAAATATGTTCTTGTCGGTAGTACTTAGTACCATTATGTTCTCACTGA
AGAATGTTGTGAATGGTATATCATATTGTTCGCGTAATTGATTGCTGTACTTGACTTGCCAGAAAAACGGGCCTGGTGCAACTGGTGGGCAATCTTGGACATCTCAGTGGCTCAAGTTTG
ACAACAGCTATTTCAAG
GTAAGATGCCTTATTTGCTATATGCTATAGTAATACCTGCAATTATGTTAACAGCTAAATAATACACATAAATTTTTCAGGATGTTAAAGAGCGACGAGATGA
GGACCTTCTAGTTCTGCCTACAGATGCTGTGCTCTTTGAGGACCCATCATTTAAG
GTTAGTGATGATTCTCATATTACAAAATGAACTGCACATATTTAGCTGATTCTCTGAACTGTATT
TCGTGTGTTGCCATGCTTGAAGATTTATGCTGAAAGGTATGCTGAGGATCAGGATACATTTTTTGAAGACTATGCTGAAGCTCATGCTAAATTGAGTAATCTCGGGTCTAAGTTTGATCC
TCCGAAG
GTAAATGAGATTAAAAGAAATGATTCCTTAGAGCTAGGAAAACATGCTATAAGTTCATGCCGACATGCTTACATTGAAATTATGCAGGGTATATCACTGGACTAG

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCGTCCACCACCACCTCCTCCGCCGCGGGCTCGCCGGCGGGTCCCCCCTCAGCCCTCTCCGCGGCCTCTTCCTCGTATCCCAGGAGCTCGGGCGGCGTCAGGCGAGCTCGGCGGCG
GCGGGGGATGCGGCGGCTGAGCTGAGGGGCGCGCGGGAGGACGTCAGGCAGCTGCTTAAGGACAAGCACTGCCACCCCATCCTG
GTTCGGTTGGGTTGGCACGACTCTGGCACTTATGAC
AAGAACATTAGCGAGTGGCCAAAGTGTGGTGGAGCGAATGGCAGCCTGAGATTTGAAATCGAGTTAAAGCATGCCGCTAATGCTG
GCCTTGTGAATGCTCTGAAGCTGGTTCAAACCATC
AAGGACAAATATGCCGGTGTCACTTATGCAGATCTGTTTCAGCTTGCCAGTGCTACTGCCATTGAG
GAAGCTGGTGGCCCCAAAATCCCCATGATCTATGGAAGGGTTGATGTTTCTGCC
CCTGAACAGTGCCCACCAGAGGGGAGACTCCCTG
CTGCTGGTCCGCCTTCACCTGCTGAACATTTGCGGGAAGTATTCTACAGAATGGGCCTGAATGACAAGGAAATTGTTGCATTGTCA
GGAGCACACACACTTGGACGGTCAAGACCAGAGCGCAGTGGCTGGGGTAAACCAGAAACAAAATACACT
AAAAACGGGCCTGGTGCAACTGGTGGGCAATCTTGGACATCTCAGTGGCTC
AAGTTTGACAACAGCTATTTCAAG
GATGTTAAAGAGCGACGAGATGAGGACCTTCTAGTTCTGCCTACAGATGCTGTGCTCTTTGAGGACCCATCATTTAAGATTTATGCTGAAAGGTAT
GCTGAGGATCAGGATACATTTTTTGAAGACTATGCTGAAGCTCATGCTAAATTGAGTAATCTCGGGTCTAAGTTTGATCCTCCGAAG
GGTATATCACTGGACTAG

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
CAAACACGCG GACCAACGAA CTACCCCAAA ACCCTTCTTC CTTCTCCCCC CGCCGCCGGC GCCGACATGG CCGTCCACCA CCACCTCCTC CGCCGCGGGC TCGCCGGCGG GTCCCCCCTC  AGCCCTCTCC GCGGCCTCTT CCTCGTATCC CAGGAGCTCG GGCGGCGTCA GGCGAGCTCG GCGGCGGCGG GGGATGCGGC GGCTGAGCTG AGGGGCGCGC GGGAGGACGT CAGGCAGCTG  CTTAAGGACA AGCACTGCCA CCCCATCCTG GTTCGGTTGG GTTGGCACGA CTCTGGCACT TATGACAAGA ACATTAGCGA GTGGCCAAAG TGTGGTGGAG CGAATGGCAG CCTGAGATTT  GAAATCGAGT TAAAGCATGC CGCTAATGCT GGCCTTGTGA ATGCTCTGAA GCTGGTTCAA ACCATCAAGG ACAAATATGC CGGTGTCACT TATGCAGATC TGTTTCAGCT TGCCAGTGCT  ACTGCCATTG AGGAAGCTGG TGGCCCCAAA ATCCCCATGA TCTATGGAAG GGTTGATGTT TCTGCCCCTG AACAGTGCCC ACCAGAGGGG AGACTCCCTG CTGCTGGTCC GCCTTCACCT  GCTGAACATT TGCGGGAAGT ATTCTACAGA ATGGGCCTGA ATGACAAGGA AATTGTTGCA TTGTCAGGAG CACACACACT TGGACGGTCA AGACCAGAGC GCAGTGGCTG GGGTAAACCA  GAAACAAAAT ACACTAAAAA CGGGCCTGGT GCAACTGGTG GGCAATCTTG GACATCTCAG TGGCTCAAGT TTGACAACAG CTATTTCAAG GATGTTAAAG AGCGACGAGA TGAGGACCTT  CTAGTTCTGC CTACAGATGC TGTGCTCTTT GAGGACCCAT CATTTAAGAT TTATGCTGAA AGGTATGCTG AGGATCAGGA TACATTTTTT GAAGACTATG CTGAAGCTCA TGCTAAATTG  AGTAATCTCG GGTCTAAGTT TGATCCTCCG AAGGGTATAT CACTGGACTA GCTGACATCA ACTACTGATG AACTGCATTT CTTGCAATAA ATTTTGAAGC ATATGGTCAT GGAGCTTGGT  TCTGGTTTTA TGACCGCTCC AACATATTGG ATCAACGAGA GCAGTATTTT GAGCTGTGTG CACCACTACG AGAAATAAAA GCAGCATTGA ACAATTCCAG CACCAAAGAT TTGTTACATT 
TAAGATACTT GTTGTACGGT ACTGTATCGA GATCCTACAT GGTGGTGATA AAAAAAAAAT CAAGCAGTTG GTCTTTCACT C 

Retrieve as FASTA