Entry information : BdiPrx140 (Bradi5g27210)
Entry ID 7904
Creation 2011-01-17 (Toky Ramarohetra)
Last sequence changes 2014-01-08 (Qiang Li)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-01-08 (Qiang Li)
Peroxidase information: BdiPrx140 (Bradi5g27210)
Name (synonym) BdiPrx140 (Bradi5g27210)
Class Class III peroxidase    [Orthogroup: Prx070]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Brachypodium
Organism Brachypodium distachyon    [TaxId: 15368 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BdiPrx140
start..stop
S start..stop
TaPrx66 521 0 1..343 3..341
HvPrx03 519 0 17..343 9..338
OsPrx64 442 6e-157 1..343 1..338
BdiPrx139 440 3e-156 14..320 4..310
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 28081159..28082190 1032  
complement(join(28081159..28082190))


exon

Literature and cross-references BdiPrx140 (Bradi5g27210)
DNA ref. Phytozome 12:   Bd5 (28082190..28081159)
Protein sequence: BdiPrx140 (Bradi5g27210)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   343 (316)
PWM (Da):   %s   35761.9 (33250.7) Transmb domain:   %s   i7-29o
PI (pH):   %s   7.71 (7.31) Peptide Signal:   %s   cut: 28 range:28-343
Sequence
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Send to Peroxiscan
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MASSSRSSGG ALAAMVTMAM LLSSAAAATT AALSPDFHAA NCPQLESIVL SSVQTALRNE IALAAGLLRI FFHDCFPQGC DASVYLKGRG TEQSMGPNAT LQPKALQLIE DIRAKVHAAC  GPVVSCADIS ALATRDAVIF SGGPSYSVPQ GQMDSLTPAA QNLVDGLPSP RTSSVSALAK AFRDKGLADI ADLVALSGAH TVGRTGCPFF SDRAGRMDDA FSRRLAANCS RQPAVKQNLD 
VVTPDLFDNG YFMALVNGQG VFTSDMALIK DRATAPIVRQ FARSKDAFFQ QFAKSMAKLA ASPRPGGNVG EIRRSCFSRN PARVVETVDV EAGDEQDGFA ASA 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 5, no intron), 8 ESTs. Cultivar="Bd21".
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGAGCA GCAGCAGGAG CTCCGGTGGT GCACTAGCAG CCATGGTGAC CATGGCCATG CTGCTCTCTT CTGCCGCCGC CGCCACCACC GCCGCCCTCT CACCGGACTT CCACGCGGCC  AACTGCCCGC AGCTAGAGTC CATCGTGCTC AGCTCCGTGC AAACCGCCCT CCGTAACGAA ATCGCTCTCG CCGCCGGGCT CCTCCGGATC TTCTTCCACG ACTGCTTCCC GCAGGGCTGC  GACGCCTCTG TCTACCTCAA GGGCCGGGGC ACGGAGCAGT CCATGGGCCC CAACGCCACG CTCCAACCCA AGGCCCTTCA GCTCATCGAG GACATCCGGG CCAAGGTCCA CGCCGCGTGC  GGCCCGGTCG TCTCCTGCGC CGACATCTCG GCCCTGGCCA CCCGGGACGC CGTCATCTTC TCCGGCGGAC CCTCTTACAG TGTCCCCCAG GGCCAGATGG ACAGCTTAAC CCCTGCGGCC  CAGAACCTCG TCGATGGCCT CCCGTCCCCC AGGACGTCCA GCGTGTCCGC TCTCGCCAAG GCCTTCCGCG ACAAGGGGCT GGCCGACATC GCCGACCTCG TGGCGCTGTC CGGGGCGCAC  ACTGTCGGGA GGACAGGGTG CCCCTTCTTC TCCGACAGGG CCGGCCGGAT GGACGACGCG TTCTCGAGGC GGCTCGCGGC CAACTGCAGC CGGCAGCCGG CCGTGAAGCA GAACCTGGAC  GTGGTCACCC CGGACTTGTT CGACAACGGG TATTTCATGG CGCTGGTGAA CGGCCAGGGC GTGTTCACTT CCGACATGGC GCTCATCAAG GACCGGGCCA CGGCGCCCAT CGTGAGGCAG  TTTGCCAGGA GCAAGGACGC GTTCTTTCAG CAGTTTGCGA AATCCATGGC TAAGCTTGCT GCCTCGCCTA GGCCTGGTGG GAATGTCGGG GAGATCCGGC GCAGCTGCTT CAGCCGCAAC 
CCGGCTCGCG TCGTCGAGAC CGTCGACGTC GAAGCCGGTG ATGAGCAGGA CGGCTTCGCG GCTTCGGCTT GA 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGAGCA GCAGCAGGAG CTCCGGTGGT GCACTAGCAG CCATGGTGAC CATGGCCATG CTGCTCTCTT CTGCCGCCGC CGCCACCACC GCCGCCCTCT CACCGGACTT CCACGCGGCC  AACTGCCCGC AGCTAGAGTC CATCGTGCTC AGCTCCGTGC AAACCGCCCT CCGTAACGAA ATCGCTCTCG CCGCCGGGCT CCTCCGGATC TTCTTCCACG ACTGCTTCCC GCAGGGCTGC  GACGCCTCTG TCTACCTCAA GGGCCGGGGC ACGGAGCAGT CCATGGGCCC CAACGCCACG CTCCAACCCA AGGCCCTTCA GCTCATCGAG GACATCCGGG CCAAGGTCCA CGCCGCGTGC  GGCCCGGTCG TCTCCTGCGC CGACATCTCG GCCCTGGCCA CCCGGGACGC CGTCATCTTC TCCGGCGGAC CCTCTTACAG TGTCCCCCAG GGCCAGATGG ACAGCTTAAC CCCTGCGGCC  CAGAACCTCG TCGATGGCCT CCCGTCCCCC AGGACGTCCA GCGTGTCCGC TCTCGCCAAG GCCTTCCGCG ACAAGGGGCT GGCCGACATC GCCGACCTCG TGGCGCTGTC CGGGGCGCAC  ACTGTCGGGA GGACAGGGTG CCCCTTCTTC TCCGACAGGG CCGGCCGGAT GGACGACGCG TTCTCGAGGC GGCTCGCGGC CAACTGCAGC CGGCAGCCGG CCGTGAAGCA GAACCTGGAC  GTGGTCACCC CGGACTTGTT CGACAACGGG TATTTCATGG CGCTGGTGAA CGGCCAGGGC GTGTTCACTT CCGACATGGC GCTCATCAAG GACCGGGCCA CGGCGCCCAT CGTGAGGCAG  TTTGCCAGGA GCAAGGACGC GTTCTTTCAG CAGTTTGCGA AATCCATGGC TAAGCTTGCT GCCTCGCCTA GGCCTGGTGG GAATGTCGGG GAGATCCGGC GCAGCTGCTT CAGCCGCAAC 
CCGGCTCGCG TCGTCGAGAC CGTCGACGTC GAAGCCGGTG ATGAGCAGGA CGGCTTCGCG GCTTCGGCTT GA 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASSSRSSGG AAAMVTMAMS SAAAATTAAS DHAAnCSVSS VTARnAAAGR HDCGCDASVY KGRGTSMGnA TKADRAKVHA ACGVVSCADS AATRDAVSGG SYSVGMDSTA AnVDGSRTSS  VSAAKARDKG ADADVASGAH TVGRTGCSDR AGRMDDASRR AAnCSRAVKn DVVTDDnGYM AVnGGVTSDM AKDRATAVRA RSKDAAKSMA KAASRGGnVG RRSCSRnARV VTVDVAGDDG 
AASA 

Retrieve as FASTA