Entry information : AtPrx[P]08
Entry ID 7950
Creation 2011-01-27 (Christophe Dunand)
Last sequence changes 2013-04-09 (Catherine Mathe)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2015-12-24 (Christophe Dunand)
Peroxidase information: AtPrx[P]08
Name AtPrx[P]08
Class Class III peroxidase     [Orthogroup: Prx025]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis thaliana    [TaxId: 3702 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtPrx[P]08
start..stop
S start..stop
AtPrx08 448 2e-160 1..308 1..305
TsPrx44 423 2e-150 1..313 1..310
BrPrx44-2Ab_other 423 3e-150 1..313 1..310
AlyPrx44-1 422 3e-150 1..313 1..310
Literature and cross-references AtPrx[P]08
DNA ref. Phytozome 11:   Chr1 (12528095..12529134)
Protein sequence: AtPrx[P]08
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   313 (293)
PWM (Da):   %s   33547.28 (31313.1)  
PI (pH):   %s   7.68 (7.37) Peptide Signal:   %s   cut: 21 range:21-313
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MRAITASFFI FCFLVPSVFG KLRRGFYDSS CPLAESTVSR VVAKHHSLNQ TVTAALLRMQ FHDCFVNGCD ASLLIDSTPE RPSEKSAEAN VSVRGFEIID EVKKELEIVC PKTVSCADIV  TLATKDSIAL AGGPRFTVQT GxGNFRDxLx SSPRAVILPG PLISVAVSIK DFEGKGLNVT NMVALIGGGH SVGVAHCSLF QDRLKDPKMD SKLKAKLQNT CRGPNDPSVV LDQMTPLEVD 
NQIYKQIKSQ RGILRIDQNL GLDDSTSRIV SNFALNETLF GERFAEAMQI MGEIKVLTGN SGEIRTNCIV VSH 

Retrieve as FASTA  
Remarks Pseudogene from genomic (chromo 1). No EST. Frame shift and stop codon in frame. join(12528095..12528295,12528399..12529134)
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAGGGCAA TCACAGCTTC GTTTTTCATT TTCTGCTTCC TTGTTCCCTC TGTTTTCGGG AAGCTCCGAC GTGGGTTTTA TGACAGTTCA TGCCCTCTCG CTGAATCTAC CGTGTCTAGA  GTTGTTGCCA AACATCACTC CCTTAACCAA ACCGTTACTG CAGCGTTGCT TCGTATGCAG TTTCATGATT GCTTTGTCAA CGTTCGTAAG CTTCTCCTTT GTGTGTTTGT ATATGTATGC  ATGATGTATC ATAAACTAGC TAATTATATT AACCAAGCAA ATATTTTGAA TGCTGCATGT GTAGGGTTGT GATGCTTCCC TCTTGATCGA CTCAACGCCC GAAAGGCCAT CTGAGAAAAG  CGCGGAGGCA AACGTAAGCG TGAGAGGCTT CGAGATCATC GATGAGGTTA AGAAAGAGCT TGAGATAGTT TGCCCAAAAA CAGTCTCATG CGCAGACATT GTAACTCTAG CCACAAAAGA  CTCGATTGCA TTAGCGGGTG GTCCACGTTT CACAGTACAA ACAGGATAnG GTAATTTCCG TGATnnnTTA TAnTCAAGTC CTAGGGCTGT GATTTTGCCC GGACCACTAA TTTCCGTGGC  TGTATCAATC AAAGATTTTG AAGGTAAAGG TTTGAATGTC ACCAACATGG TTGCACTTAT TGGTGGTGGT CACAGCGTCG GTGTTGCACA TTGCAGTCTT TTTCAGGATA GGCTTAAGGA  TCCTAAAATG GACAGCAAAC TGAAAGCTAA GTTACAGAAC ACATGTCGTG GTCCAAATGA CCCATCAGTG GTCTTGGACC AAATGACGCC ACTTGAGGTA GACAATCAAA TCTATAAACA  GATAAAAAGT CAAAGAGGAA TCCTTAGAAT TGATCAAAAC TTGGGTCTCG ATGACTCAAC CAGTAGGATC GTATCAAATT TTGCATTAAA TGAAACATTA TTCGGAGAAA GATTTGCTGA 
AGCAATGCAG ATAATGGGTG AAATAAAAGT TCTTACGGGA AATTCTGGAG AGATCAGGAC AAACTGCATA GTCGTCAGCC ACTGA 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAGGGCAA TCACAGCTTC GTTTTTCATT TTCTGCTTCC TTGTTCCCTC TGTTTTCGGG AAGCTCCGAC GTGGGTTTTA TGACAGTTCA TGCCCTCTCG CTGAATCTAC CGTGTCTAGA  GTTGTTGCCA AACATCACTC CCTTAACCAA ACCGTTACTG CAGCGTTGCT TCGTATGCAG TTTCATGATT GCTTTGTCAA CGGTTGTGAT GCTTCCCTCT TGATCGACTC AACGCCCGAA  AGGCCATCTG AGAAAAGCGC GGAGGCAAAC GTAAGCGTGA GAGGCTTCGA GATCATCGAT GAGGTTAAGA AAGAGCTTGA GATAGTTTGC CCAAAAACAG TCTCATGCGC AGACATTGTA  ACTCTAGCCA CAAAAGACTC GATTGCATTA GCGGGTGGTC CACGTTTCAC AGTACAAACA GGATAnGGTA ATTTCCGTGA TnnnTTATAn TCAAGTCCTA GGGCTGTGAT TTTGCCCGGA  CCACTAATTT CCGTGGCTGT ATCAATCAAA GATTTTGAAG GTAAAGGTTT GAATGTCACC AACATGGTTG CACTTATTGG TGGTGGTCAC AGCGTCGGTG TTGCACATTG CAGTCTTTTT  CAGGATAGGC TTAAGGATCC TAAAATGGAC AGCAAACTGA AAGCTAAGTT ACAGAACACA TGTCGTGGTC CAAATGACCC ATCAGTGGTC TTGGACCAAA TGACGCCACT TGAGGTAGAC  AATCAAATCT ATAAACAGAT AAAAAGTCAA AGAGGAATCC TTAGAATTGA TCAAAACTTG GGTCTCGATG ACTCAACCAG TAGGATCGTA TCAAATTTTG CATTAAATGA AACATTATTC 
GGAGAAAGAT TTGCTGAAGC AATGCAGATA ATGGGTGAAA TAAAAGTTCT TACGGGAAAT TCTGGAGAGA TCAGGACAAA CTGCATAGTC GTCAGCCACT GA 

Retrieve as FASTA