Entry information : AlyPrxIIA-4
Entry ID 7952
Creation 2011-01-28 (Christophe Dunand)
Last sequence changes 2011-01-28 (Christophe Dunand)
Sequence status complete
Reviewer Qiang Li
Last annotation changes 2012-05-10 (Christophe Dunand)
Peroxidase information: AlyPrxIIA-4
Name AlyPrxIIA-4
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII003]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Arabidopsis
Organism Arabidopsis lyrata    [TaxId: 59689 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AlyPrxIIA-4
start..stop
S start..stop
AlyPrxIIA-2 603 0 11..396 148..535
AlyPrxIIA-1 550 0 3..392 1..386
AlyPrxIIA-3 550 0 1..395 1..389
AtPrxII01 526 0 2..396 156..549
Literature and cross-references AlyPrxIIA-4
DNA ref. Phytozome 11:   scaffold_2 (10565712..10545563)
Protein sequence: AlyPrxIIA-4
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   396
PWM (Da):   %s   46140.66  
PI (pH):   %s   9.25
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MTITMSNLPT DLVEEIISKV PLKSMRGVRL TCKKWNDLFK SRSFTKMHIG KQEQAARELG QTRMIMMMDY NVYLMGIVLN ENPSTESLDK LTCLQDSEQV KIYQVFHCEG LLLCILKDDD  TKVVVWNPYL GQTRWIQTRK YYHASGGKGR DFYKYALGYK NNRKRKSCRS PKILRFIDDF NRYPKNPALR YEIYDFDSDL WTTLDVFPHW RILSHHGISL KGNTYWGVVE RNAKAHIKHI  ICFDFTSERF GPFLPLPLPF RDWKAQCVSL SSVRDEKIAA FFQERGTYKI EIWITTKIET ENVSWSNFFT TNMPSCIGYR LKSFFIEEEK QVAVVFDKEG KNLCDTIHII GEAGCLRKVE 
LGEPTEKKCL PLVCSYVPSI VQIKLHKEGK RKEQSD 

Retrieve as FASTA  
Remarks complement(join(10545563..10545784,10545815..10546039,10548365..10549066)) Longer 5' end can be found in the geneomic with gap and frame shift.
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGACAATAA CGATGTCAAA TCTTCCAACG GATTTAGTAG AGGAGATTAT CTCTAAGGTT CCTTTGAAAT CTATGAGAGG AGTGCGATTA ACTTGCAAAA AGTGGAACGA TTTGTTCAAA  AGCCGGAGCT TTACGAAGAT GCACATTGGC AAACAAGAAC AAGCAGCTAG GGAATTAGGT CAAACTCGGA TGATCATGAT GATGGATTAC AATGTTTATT TAATGGGCAT TGTCCTCAAT  GAAAATCCAT CCACAGAGTC TCTAGATAAA CTTACGTGCC TACAAGATTC AGAACAAGTC AAAATTTATC AAGTCTTTCA TTGTGAGGGT TTATTGTTAT GCATCTTGAA AGATGATGAT  ACTAAGGTTG TTGTTTGGAA TCCGTATTTG GGGCAAACGA GATGGATCCA AACCAGAAAG TATTACCACG CTAGTGGAGG GAAAGGACGA GATTTTTACA AGTACGCTCT AGGATACAAA  AATAATCGCA AAAGAAAATC TTGTCGTAGC CCTAAAATCT TGAGGTTTAT AGATGATTTC AACCGTTACC CGAAGAACCC TGCTTTACGG TATGAAATCT ACGATTTTGA TTCCGATTTA  TGGACTACTC TTGATGTCTT TCCACACTGG CGTATATTGT CCCACCATGG CATTTCTCTC AAGGGAAACA CTTACTGGGG CGTTGTAGAA CGGAACGCAA AGGCACACAT TAAACATATA  ATCTGTTTTG ATTTTACAAG TGAGAGATTT GGACCGTTTC TGCCTCTTCC TCTGCCGTTT AGGGATTGGA AGGCACAATG TGTTTCTCTA TCTTCAGTTA GAGACGAGAA GATCGCGGCT  TTCTTTCAAG AAAGGGGAAC ATATAAAATT GAGATATGGA TTACGACTAA GATTGAGACC GAAAATGTCT CTTGGAGCAA TTTCTTCACA ACGAATATGC CATCATGTAT TGGCTATAGG  CTTAAGAGTT TCTTCATTGA GGAGGAGAAA CAAGTTGCTG TTGTTTTTGA CAAAGAAGGA AAAAATCTAT GCGATACTAT TCATATCATT GGAGAGGCTG GATGCTTGAG GAAAGTGGAG 
CTTGGAGAAC CCACAGAAAA AAAGTGTTTG CCACTTGTGT GCTCTTATGT TCCAAGTATA GTGCAAATCA AGCTACATAA AGAAGGCAAA AGGAAAGAAC AAAGCGATTA G 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGACAATAA CGATGTCAAA TCTTCCAACG GATTTAGTAG AGGAGATTAT CTCTAAGGTT CCTTTGAAAT CTATGAGAGG AGTGCGATTA ACTTGCAAAA AGTGGAACGA TTTGTTCAAA  AGCCGGAGCT TTACGAAGAT GCACATTGGC AAACAAGAAC AAGCAGCTAG GGAATTAGGT CAAACTCGGA TGATCATGAT GATGGATTAC AATGTTTATT TAATGGGCAT TGTCCTCAAT  GAAAATCCAT CCACAGAGTC TCTAGATAAA CTTACGTGCC TACAAGATTC AGAACAAGTC AAAATTTATC AAGTCTTTCA TTGTGAGGGT TTATTGTTAT GCATCTTGAA AGATGATGAT  ACTAAGGTTG TTGTTTGGAA TCCGTATTTG GGGCAAACGA GATGGATCCA AACCAGAAAG TATTACCACG CTAGTGGAGG GAAAGGACGA GATTTTTACA AGTACGCTCT AGGATACAAA  AATAATCGCA AAAGAAAATC TTGTCGTAGC CCTAAAATCT TGAGGTTTAT AGATGATTTC AACCGTTACC CGAAGAACCC TGCTTTACGG TATGAAATCT ACGATTTTGA TTCCGATTTA  TGGACTACTC TTGATGTCTT TCCACACTGG CGTATATTGT CCCACCATGG CATTTCTCTC AAGGGAAACA CTTACTGGGG CGTTGTAGAA CGGAACGCAA AGGCACACAT TAAACATATA  ATCTGTTTTG ATTTTACAAG TGAGAGATTT GGACCGTTTC TGCCTCTTCC TCTGCCGTTT AGGGATTGGA AGGCACAATG TGTTTCTCTA TCTTCAGTTA GAGACGAGAA GATCGCGGCT  TTCTTTCAAG AAAGGGGAAC ATATAAAATT GAGATATGGA TTACGACTAA GATTGAGACC GAAAATGTCT CTTGGAGCAA TTTCTTCACA ACGAATATGC CATCATGTAT TGGCTATAGG  CTTAAGAGTT TCTTCATTGA GGAGGAGAAA CAAGTTGCTG TTGTTTTTGA CAAAGAAGGA AAAAATCTAT GCGATACTAT TCATATCATT GGAGAGGCTG GATGCTTGAG GAAAGTGGAG 
CTTGGAGAAC CCACAGAAAA AAAGTGTTTG CCACTTGTGT GCTCTTATGT TCCAAGTATA GTGCAAATCA AGCTACATAA AGAAGGCAAA AGGAAAGAAC AAAGCGATTA G 

Retrieve as FASTA