Entry information : SbPrx112 (Sobic.009G033300.1 [2.1] / SB09G002810 [1.4])
Entry ID 804
Creation 2006-01-02 (Christophe Dunand)
Last sequence changes 2006-01-02 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx112 (Sobic.009G033300.1 [2.1] / SB09G002810 [1.4])
Name (synonym) SbPrx112 (Sobic.009G033300.1 [2.1] / SB09G002810 [1.4])
Class Class III peroxidase    [Orthogroup: Prx011]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Roots
Inducers Acid treatment
Alkaline treatment
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx112
start..stop
S start..stop
SbPrx87 637 0 24..333 31..340
ZmPrx22 617 0 1..333 1..338
ZmPrx146 617 0 1..333 1..338
ZmPrx87 607 0 23..333 30..340
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3048001..3049002 1002  
complement(join(3048001..3049002))


exon

Literature and cross-references SbPrx112 (Sobic.009G033300.1 [2.1] / SB09G002810 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 11:   chromosome_9 (3049002..3048001)
Cluster/Prediction ref. UniGene:   Sbi.8401
Protein sequence: SbPrx112 (Sobic.009G033300.1 [2.1] / SB09G002810 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   333 (312)
PWM (Da):   %s   36090.06 (34012.9)  
PI (pH):   %s   6.98 (6.92) Peptide Signal:   %s   cut: 22 range:22-333
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MVSTWLATVL AALVVATAAH AAAELEVGFY KHSCPKAEEI VRNAVRRGIA RDAGVGAGLI RMQFHDCFVR GCDASILINS TPGNKAEKDS VANNPSMRGF DVVDDAKAVL EAHCPRTVSC  ADIIAFAARD GAYLAGGLDY KVPSGRRDGR VSKEDEVLDN NVPAPFDDVA ELIKSFKRKG LNADDMVTLS GAHTIGRSHC SSFTQRLYNF SGQLGRTDPS LDPTYAEHLK MRCPWPSSNG 
QMDTTVVPLD PVTPATFDNQ YYKNVLAHKV LFVSDNTLLD NPWTAGMVHF NAAVEKAWQV KFAKAMVKMG KVQVLTGDEG EIREKCFVVN PHY 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 9, no intron) and 5 ESTs.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTGTCGA CATGGCTGGC AACAGTCTTG GCGGCGCTCG TCGTCGCCAC GGCGGCACAC GCGGCGGCGG AACTGGAGGT CGGTTTCTAC AAGCACTCGT GCCCAAAGGC CGAGGAGATC  GTGCGCAACG CCGTCCGCCG CGGTATCGCC CGTGACGCCG GCGTCGGCGC CGGACTCATC CGGATGCAGT TCCATGACTG CTTCGTCCGG GGCTGCGACG CCTCCATCCT CATCAACTCC  ACGCCGGGCA ACAAGGCCGA GAAGGACTCC GTCGCCAACA ACCCCAGCAT GCGCGGCTTC GACGTCGTCG ACGACGCCAA GGCCGTCCTC GAGGCGCACT GCCCGCGCAC CGTCTCCTGC  GCCGACATCA TCGCGTTCGC CGCCCGCGAC GGCGCCTACC TCGCCGGCGG CCTCGACTAC AAGGTCCCCT CGGGCCGCCG TGACGGCCGC GTGTCCAAAG AGGACGAGGT GCTCGACAAC  AATGTCCCCG CCCCGTTTGA CGACGTCGCC GAGCTCATCA AGAGCTTCAA GCGCAAGGGT CTCAACGCCG ACGACATGGT CACGCTCTCC GGCGCGCACA CCATTGGCCG CTCTCACTGC  TCCTCCTTCA CGCAGCGCCT TTACAACTTC AGCGGCCAGC TCGGGCGGAC TGACCCGTCG CTTGACCCCA CCTACGCTGA GCACCTCAAG ATGCGCTGCC CATGGCCGTC CAGCAACGGC  CAGATGGACA CCACGGTGGT GCCGCTCGAC CCGGTCACGC CGGCGACCTT CGACAACCAG TACTACAAGA ACGTGCTGGC GCACAAGGTC CTGTTCGTCT CCGACAACAC GCTGCTCGAC  AACCCCTGGA CGGCCGGAAT GGTCCACTTC AACGCCGCAG TCGAGAAAGC ATGGCAGGTC AAGTTCGCCA AGGCCATGGT GAAGATGGGC AAGGTCCAGG TGCTCACCGG CGACGAGGGA 
GAGATCAGGG AGAAGTGCTT CGTCGTCAAC CCACACTACT AG 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGTGTCGA CATGGCTGGC AACAGTCTTG GCGGCGCTCG TCGTCGCCAC GGCGGCACAC GCGGCGGCGG AACTGGAGGT CGGTTTCTAC AAGCACTCGT GCCCAAAGGC CGAGGAGATC  GTGCGCAACG CCGTCCGCCG CGGTATCGCC CGTGACGCCG GCGTCGGCGC CGGACTCATC CGGATGCAGT TCCATGACTG CTTCGTCCGG GGCTGCGACG CCTCCATCCT CATCAACTCC  ACGCCGGGCA ACAAGGCCGA GAAGGACTCC GTCGCCAACA ACCCCAGCAT GCGCGGCTTC GACGTCGTCG ACGACGCCAA GGCCGTCCTC GAGGCGCACT GCCCGCGCAC CGTCTCCTGC  GCCGACATCA TCGCGTTCGC CGCCCGCGAC GGCGCCTACC TCGCCGGCGG CCTCGACTAC AAGGTCCCCT CGGGCCGCCG TGACGGCCGC GTGTCCAAAG AGGACGAGGT GCTCGACAAC  AATGTCCCCG CCCCGTTTGA CGACGTCGCC GAGCTCATCA AGAGCTTCAA GCGCAAGGGT CTCAACGCCG ACGACATGGT CACGCTCTCC GGCGCGCACA CCATTGGCCG CTCTCACTGC  TCCTCCTTCA CGCAGCGCCT TTACAACTTC AGCGGCCAGC TCGGGCGGAC TGACCCGTCG CTTGACCCCA CCTACGCTGA GCACCTCAAG ATGCGCTGCC CATGGCCGTC CAGCAACGGC  CAGATGGACA CCACGGTGGT GCCGCTCGAC CCGGTCACGC CGGCGACCTT CGACAACCAG TACTACAAGA ACGTGCTGGC GCACAAGGTC CTGTTCGTCT CCGACAACAC GCTGCTCGAC  AACCCCTGGA CGGCCGGAAT GGTCCACTTC AACGCCGCAG TCGAGAAAGC ATGGCAGGTC AAGTTCGCCA AGGCCATGGT GAAGATGGGC AAGGTCCAGG TGCTCACCGG CGACGAGGGA 
GAGATCAGGG AGAAGTGCTT CGTCGTCAAC CCACACTACT AG 

Retrieve as FASTA