Entry information : EgrPrx[P]162
Entry ID 8044
Creation 2011-02-04 (Christophe Dunand)
Last sequence changes 2012-02-16 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-04-07 (Christophe Dunand)
Peroxidase information: EgrPrx[P]162
Name EgrPrx[P]162
Class Class III peroxidase     [Orthogroup: Prx003]*
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus grandis    [TaxId: 71139 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EgrPrx[P]162
start..stop
S start..stop
EcamPrx[P]162 543 0 1..290 7..296
EguPrx[P]162 537 0 1..290 1..290
EgrPrx[P]164 536 0 1..289 1..291
EguPrx[P]164 517 0 1..289 1..291
Literature and cross-references EgrPrx[P]162
DNA ref. Phytozome 12:   scaffold_11 (9213307..9214695)
Protein sequence: EgrPrx[P]162
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   289
PWM (Da):   %s   30950.74  
PI (pH):   %s   8.49
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGIVLGFLGN AAVSTQAQLE MGYYSKSCPE AEKIVRELSK xHIRNAHSLA AALLRMHFHD FFVGCDASVL LNSS*SNPAE RDSPPNFTMR GFDFIDRVKS LVEAEFPGIV SCADIIALAA  RDAIAATGGP FWRVPTVRRD GVISRASEAL SNIPSPSSKL NAPQTFFANK GLDLKDLVLP SGAHTIGASH CSSFRNRLYN FTGGEDQDPS LESGYAANLK AKKCRSLSND TIFRSDSAIT 
TSPAAKLFIT QVLQGSLDNF YAQFALATEK MGRIDVKTGL AGEIRKHHAL 

Retrieve as FASTA  
Remarks Pseudogene from genomic (frame shift in exon 1, stop codon in frame, no splicing donor for the intron 3 and large fragment is missing in exon 4). No prediction from Phytozome. No EST.
join(9213307..9213494,9213672..9213863,9214052..9214214,9214370..9214695)
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGCATTG TTTTGGGTTT TCTAGGGAAT GCTGCTGTCT CAACTCAAGC TCAACTTGAG ATGGGTTATT ATTCTAAGAG CTGCCCAGAA GCTGAAAAAA TTGTGAGAGA GTTGTCGAAG  ATnCACATCC GCAATGCTCA TTCTTTAGCA GCCGCTCTGC TGAGGATGCA CTTTCATGAT TTCTTCGTTG GGGTTTTTAC TTTCTCTCCC ATGTAGCTTG CATCAGTGCA CGTTAATACC  TTACAGCAAA CTTGAGAAAT TTGGAGGAAT CATTACTGCA TATCTCCATT TCAAGAGTAC TAGTATTTTC TTAATCTCAT GCTAGCTTTG AGAAATTTGA GCTCTTTGTT TGTTGATCAC  CGTCAGGGTT GTGATGCTTC TGTGCTCTTG AACTCTAGTT GAAGCAACCC AGCAGAGAGA GATTCTCCTC CAAACTTCAC TATGAGAGGC TTCGACTTCA TCGATCGAGT GAAGAGCCTT  GTCGAAGCTG AATTCCCCGG GATTGTCTCT TGCGCAGACA TCATAGCTTT GGCCGCAAGA GATGCAATAG CGGCCACTAT GAGGACAACA GCACAAAGAT TATTTCCACG AAAGCAGATA  TCCATTGTTC AAGTGCGTCT AGATCTTAAC ACTACGTGGA AACTGTTTTC TCCACTGATG ATGGAATGAG GATAGATTTG CAAGCGAAAA AAGCATTGAG ATTGAGTGGG GAATTAAAAC  TGTATCTGAT ATGCATGAAA CTATAGGGAG GTCCATTTTG GAGAGTTCCT ACTGTAAGAA GAGATGGAGT GATTTCAAGG GCATCGGAAG CATTGAGCAA CATCCCTTCT CCATCCAGCA  AACTCAACGC TCCCCAAACA TTTTTCGCCA ATAAAGGACT CGATCTTAAA GACTTAGTTT TACCGTCCGG TGAGGCCATA TGTCACCCAC CTATAAAAAT GAGAGGATAT CAGTTGATGA  GTTAAACCAT TAGTATCGAG AGATAACGAA ATGTATATTC AGTACGTGAC TAAGCTGGTC ATGTGCTAAA TTAGTAGTGG CTGATGTGAC TTGTTCTGAC ATAGGAGCTC ACACGATTGG  TGCATCTCAC TGCTCGTCTT TCCGGAACCG CCTATACAAC TTCACTGGCG GTGAGGATCA AGACCCCTCC TTGGAAAGCG GGTACGCGGC GAATCTCAAG GCCAAGAAGT GCAGGAGCCT  GAGTAACGAT ACCATCTTTC GATCGGATTC TGCTATCACT ACCAGTCCTG CTGCCAAGCT CTTCATCACA CAAGTCCTTC AAGGGTCACT TGACAACTTC TACGCTCAAT TTGCCTTGGC 
AACGGAGAAG ATGGGCCGGA TCGACGTGAA GACTGGGCTG GCGGGCGAGA TAAGGAAGCA TCATGCGCTG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGCATTG TTTTGGGTTT TCTAGGGAAT GCTGCTGTCT CAACTCAAGC TCAACTTGAG ATGGGTTATT ATTCTAAGAG CTGCCCAGAA GCTGAAAAAA TTGTGAGAGA GTTGTCGAAG  ATnCACATCC GCAATGCTCA TTCTTTAGCA GCCGCTCTGC TGAGGATGCA CTTTCATGAT TTCTTCGTTG GTTGTGATGC TTCTGTGCTC TTGAACTCTA GTTGAAGCAA CCCAGCAGAG  AGAGATTCTC CTCCAAACTT CACTATGAGA GGCTTCGACT TCATCGATCG AGTGAAGAGC CTTGTCGAAG CTGAATTCCC CGGGATTGTC TCTTGCGCAG ACATCATAGC TTTGGCCGCA  AGAGATGCAA TAGCGGCCAC TGGAGGTCCA TTTTGGAGAG TTCCTACTGT AAGAAGAGAT GGAGTGATTT CAAGGGCATC GGAAGCATTG AGCAACATCC CTTCTCCATC CAGCAAACTC  AACGCTCCCC AAACATTTTT CGCCAATAAA GGACTCGATC TTAAAGACTT AGTTTTACCG TCCGGAGCTC ACACGATTGG TGCATCTCAC TGCTCGTCTT TCCGGAACCG CCTATACAAC  TTCACTGGCG GTGAGGATCA AGACCCCTCC TTGGAAAGCG GGTACGCGGC GAATCTCAAG GCCAAGAAGT GCAGGAGCCT GAGTAACGAT ACCATCTTTC GATCGGATTC TGCTATCACT  ACCAGTCCTG CTGCCAAGCT CTTCATCACA CAAGTCCTTC AAGGGTCACT TGACAACTTC TACGCTCAAT TTGCCTTGGC AACGGAGAAG ATGGGCCGGA TCGACGTGAA GACTGGGCTG 
GCGGGCGAGA TAAGGAAGCA TCATGCGCTG 

Retrieve as FASTA