Entry information : EgrAPx[P]04 (Eucgr.C02673 / Egrandis_v1_0.036296m)
Entry ID 8080
Creation 2011-02-04 (Christophe Dunand)
Last sequence changes 2012-01-24 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2012-02-28 (Qiang Li)
Peroxidase information: EgrAPx[P]04 (Eucgr.C02673 / Egrandis_v1_0.036296m)
Name (synonym) EgrAPx[P]04 (Eucgr.C02673 / Egrandis_v1_0.036296m)
Class Ascorbate peroxidase     [Orthogroup: APx003]*
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus grandis    [TaxId: 71139 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EgrAPx[P]04
start..stop
S start..stop
EguAPx[P]04 334 2e-119 1..182 1..182
EglAPx09 331 8e-117 1..182 107..287
EgrAPx09 331 9e-117 1..182 107..287
EguAPx09 330 2e-116 1..182 107..287
Literature and cross-references EgrAPx[P]04 (Eucgr.C02673 / Egrandis_v1_0.036296m)
DNA ref. Phytozome 12:   scaffold_3 (50947080..50949338)
Protein sequence: EgrAPx[P]04 (Eucgr.C02673 / Egrandis_v1_0.036296m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   182
PWM (Da):   %s   19706.22 Transmb domain:   %s   o153-175i
PI (pH):   %s   7.75
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGPTIDFVPG RKDSRVSPNE GRLPDANQGP PRLRDIFYRM GLSDKDIVAL SGAHTLGRKH PERSGFDGPW TQEPLKFDNS YFVELLKGDA EGLLKLPTDK ALLEDPAFRP YVELYAKDED 
AFFRDYAISH KKLSELGFTP SSSGSKTVAN GAVLAQGAVG VAVAVAVVxI LSYFYEVRKK MK 

Retrieve as FASTA  
Remarks Pseudogene from genomic (7 exons, the two first are missing). Incorrect prediction from Phytozome (only two exons). No EST. join(50947080..50947115,50947192..50947240,50948127..50948209,50948296..50948375,50948465..50948567,50949143..50949338)
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGAGGTCCCA CAATCGACTT TGTTCCCGGA AGAAAGGTAC TCTGTTTTAG CTGTATGTGA GCAAGATAAT TCTTACGAGT GCCTTATTCA TTAAGTTTTT TTCTATCTGC AGGATTCAAG  AGTTTCTCCA AACGAAGGAA GACTTCCAGA TGCTAATCAA GGTATTTTGT TGTGTCAACT TTCCCTTTGT TGTTTGGCCT CCCTTTATTT CTCTCCATCC CTCCCTCTAA ATATTATGGC  CTACCATGCT TCTTGTTGCT CCAGGCGAAA AGTTAAATAA CTATTTATTG TTTTTCTTAT GGTTGTGGCC TGTTAGTATT GAAATGTATG TCCATCTCAT CTGAATATCA ATTAGTAAGT  TTCCAGAGGA ATGATTTGAA TGAGATAAGA AGCGCAGTGG AAAAAGAGGT ATCGGAGCTA ACTGACATTC GGATGTTGTA CATCCCATCT AAATGTCAGT AAGTTTCCAG ATTAAGAACT  GCACAAGCAA AATGGGCACA GTGCCTATTT CATATGAGTC AGCTGTTGTG AACTCACTAC GAAGAATGAC TTGAGAGAGA AGTGCTGGGA TTTGAACTCT TGATCTGTCA TATGAAACAG  TGCTAGAATA CCCAACCTAA AAGTTTAAGC TGTGATGTGG AGAGAGACAA CATGTATATA AGAAAACTGA GCCATTAGGT GAGAGAGACT ATATGTGTAT GAGACTCATT ATGACCACGT  TTTCAGGGGA TGTTTGATTA TATTAAAAAC AATATTACTT CTCATGCAAA CCCAGTTTGA TATTTCACAT GATATTTTAC ATCTGCAACT CACTGTAGCT GATCGAAAGG AGGCTCAAAT  GAAAGGAGGC CTTCAACCGC AGCTTGGTTA AGCTTATCGA TTTGTGATAT TCACGTTTAA CAATCCACTG CCTATCCATA ACTTATCATA GCTCTAAATC CATAGGAGAT CTTTCATGCG  TTATAATTCT CTTATTGGTG AAATACACGT ACATTTTGCT TAAAGGGCAT TCGAAATTTT TTCTAAACTT GTCATTGCTG GATGTAGGTC CTCCACGTCT AAGGGACATC TTTTACAGGA  TGGGTCTCTC GGACAAGGAC ATAGTGGCCT TATCAGGGGC TCATACACTG GTAATTTCTA TTTCTGCTTG GATTTACATT CACGGTCAGC TGGGGATGCG CAACCACACT TGTTATTTTT  TTATTCTTGT GTCTAGGGAA GGAAACACCC GGAAAGATCT GGATTTGATG GTCCTTGGAC TCAGGAACCC CTTAAGTTTG ATAATTCCTA TTTTGTGTAA GGTTTCATCT TTTCACTGGA  TGCATTTTCT AAGTTTCGGT TGGAGCATTA TAGAGCCAGA TGCTAATTGA TCATTTTTGA CACAGCGAGT TGTTGAAAGG GGACGCAGAG GGGCTGCTGA AACTGCCAAC TGACAAGGCA  TTGCTGGAAG ATCCTGCATT TCGCCCTTAT GTTGAGTTGT ATGCGAAGTA AATAAGCTTT TCGCGTGGTC TGGTGACTCC ATTGATAAAT CTATAAAATC GAATTGCAGT TACAGGTTTT  CTTTTTGTAA ATTTGTTTTT GATGAAACTA CCCCGCCACA CCACTATTTC GTTTCCTTAT GCACCCGGTC TATAACCCTT TGATGCTACT GTCCTTGGTT TTGCCGAGAA TGAAAAGAGA  TGGAAAGTGT TTTTCATGGA ATTTATGCTG TGTAGGCTTG TGATGCTTAA AAGTAAGCAT TCACTCTGTT CCATCACTAT CTTCTATGTA GAGACCAGGA AATATTCATA ATGAGATCGC  ACATCAAATG TTGGGTAGAT ACATACATGT GTTGGGATGG ATATATTATG TGGTTCCCTG AAACCTCTAG GCTAGAGCAT CATTTTTGTG CTACTGGGAA CACCTGATTT GATATTTGAA  TTGGTTGTTG TTCCCGCAAC TCTCTCATGG TGGTTGGCAC GACCTTGAAA AGAGACAAAT GGACAATTTG ATACTGTGCT TTTTTTCCTC GTTTTCTTTT GCTATATGCT CTTCTTTCCC  TAATGTTGTC AAGCATGTGG CAGGATGAGG ATGCATTTTT CAGAGATTAT GCAATCTCGC ATAAGAAGCT CTCTGAACTG GGGTTCACGC CAAGTTCTTC AGGCAGCAAG ACAGTAGCGA 
ATGGTGCCGT ATTGGCACAA GGTGCTGTTG GAGTGGCAGT GGCTGTGGCT GTGGTGAnnA TCTTGAGCTA CTTCTATGAA GTGCGCAAGA AAATGAAGTG A 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGAGGTCCCA CAATCGACTT TGTTCCCGGA AGAAAGGATT CAAGAGTTTC TCCAAACGAA GGAAGACTTC CAGATGCTAA TCAAGGTCCT CCACGTCTAA GGGACATCTT TTACAGGATG  GGTCTCTCGG ACAAGGACAT AGTGGCCTTA TCAGGGGCTC ATACACTGGG AAGGAAACAC CCGGAAAGAT CTGGATTTGA TGGTCCTTGG ACTCAGGAAC CCCTTAAGTT TGATAATTCC  TATTTTGTCG AGTTGTTGAA AGGGGACGCA GAGGGGCTGC TGAAACTGCC AACTGACAAG GCATTGCTGG AAGATCCTGC ATTTCGCCCT TATGTTGAGT TGTATGCGAA GGATGAGGAT  GCATTTTTCA GAGATTATGC AATCTCGCAT AAGAAGCTCT CTGAACTGGG GTTCACGCCA AGTTCTTCAG GCAGCAAGAC AGTAGCGAAT GGTGCCGTAT TGGCACAAGG TGCTGTTGGA 
GTGGCAGTGG CTGTGGCTGT GGTGAnnATC TTGAGCTACT TCTATGAAGT GCGCAAGAAA ATGAAGTGA 

Retrieve as FASTA