Entry information : EgrPrx[P]160 ( Eucgr.J02563 / Egrandis_v1_0.052949m)
Entry ID 8118
Creation 2011-02-04 (Christophe Dunand)
Last sequence changes 2012-02-16 (Qiang Li)
Sequence status theoretical translation / pseudogene
Reviewer Christophe Dunand
Last annotation changes 2016-03-12 (Christophe Dunand)
Peroxidase information: EgrPrx[P]160 ( Eucgr.J02563 / Egrandis_v1_0.052949m)
Name (synonym) EgrPrx[P]160 ( Eucgr.J02563 / Egrandis_v1_0.052949m)
Class Class III peroxidase     [Orthogroup: Prx007]*
Taxonomy Eukaryota Viridiplantae Streptophyta Myrtaceae Eucalyptus
Organism Eucalyptus grandis    [TaxId: 71139 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value EgrPrx[P]160
start..stop
S start..stop
EguPrx[P]160 479 1e-174 1..250 1..250
EguPrx[P]159 394 4e-141 1..243 1..219
EcamPrx[P]160 392 3e-140 2..250 5..249
EglPrx[P]160 390 1e-139 1..250 1..226
Literature and cross-references EgrPrx[P]160 ( Eucgr.J02563 / Egrandis_v1_0.052949m)
DNA ref. Phytozome 12:   scaffold_10 (31505357..31506165)
Protein sequence: EgrPrx[P]160 ( Eucgr.J02563 / Egrandis_v1_0.052949m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   250
PWM (Da):   %s   26374.04  
PI (pH):   %s   4.92
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
QGCNALVLLD GSTSEPSEQD TPPNRNLRCT ALQIxDLCDL VEKKCCRVVS CADIATIAAH DSIFLSGRPE YDVPLGRRDE LASASVNETT KNLPSPAQSA SQILAALAKK SFDATNVVTL  SGAHTIGLGH CGSFTDRLYP TPDPAMEKSF ARAxxxxCPT TNSTNTTVLD IQSPNRFDNR YFVNLVNxGL FTSDQDQYED PTTRDIVTSF AKDLELFFER FVLAMTKMGQ LGLLTGTKGE 
IQARCSARNS 

Retrieve as FASTA  
Remarks Pseudogene from genomic. Incorrect prediction from phytozome (exon 1 is missing, frame shift in the exon 2, 2 frame shift in the exon 4). No EST.
join(31505357..31505550,31505620..31506165).
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CAGGGATGCA ATGCTTTGGT GTTGCTGGAT GGATCAACGA GTGAACCGAG CGAGCAGGAC ACCCCACCGA ATCGAAACTT GAGATGCACA GCGCTCCAAA TCATnGACCT GTGCGACCTC  GTGGAGAAGA AATGTTGTCG GGTAGTCTCT TGTGCTGACA TCGCCACCAT CGCCGCTCAC GATTCCATTT TCTTGGTAAA GTTGGATTTC TTTATCGGGG ATTAATTGTA AATAATGTGA  CCATGCATAA TATACTGTGT GCAGTCGGGC AGACCTGAGT ATGACGTGCC ATTGGGAAGG CGTGACGAAC TCGCTTCCGC GTCTGTAAAC GAGACCACAA AGAATTTACC TTCACCAGCT  CAGAGCGCCA GCCAAATTCT CGCTGCCCTA GCCAAGAAAA GCTTCGACGC CACCAATGTA GTGACACTCT CTGGAGCCCA CACCATCGGG CTTGGGCACT GTGGTAGCTT CACCGACCGG  CTCTACCCGA CCCCAGACCC CGCCATGGAG AAAAGTTTCG CCCGTGCATG nnnnnnnnnn TGCCCCACTA CAAACTCCAC GAACACCACA GTCCTGGACA TCCAATCGCC CAACCGATTC  GACAACAGGT ACTTTGTCAA TTTGGTGAAC TnnGGCCTGT TCACGTCGGA CCAAGATCAA TATGAGGACC CCACAACGAG GGACATCGTT ACTAGCTTCG CCAAGGACCT GGAATTGTTC 
TTCGAGAGGT TTGTTCTCGC TATGACCAAG ATGGGGCAGC TTGGCCTGTT GACTGGGACG AAAGGAGAAA TCCAAGCCCG CTGCTCGGCC AGGAATTCCT AG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CAGGGATGCA ATGCTTTGGT GTTGCTGGAT GGATCAACGA GTGAACCGAG CGAGCAGGAC ACCCCACCGA ATCGAAACTT GAGATGCACA GCGCTCCAAA TCATnGACCT GTGCGACCTC  GTGGAGAAGA AATGTTGTCG GGTAGTCTCT TGTGCTGACA TCGCCACCAT CGCCGCTCAC GATTCCATTT TCTTGTCGGG CAGACCTGAG TATGACGTGC CATTGGGAAG GCGTGACGAA  CTCGCTTCCG CGTCTGTAAA CGAGACCACA AAGAATTTAC CTTCACCAGC TCAGAGCGCC AGCCAAATTC TCGCTGCCCT AGCCAAGAAA AGCTTCGACG CCACCAATGT AGTGACACTC  TCTGGAGCCC ACACCATCGG GCTTGGGCAC TGTGGTAGCT TCACCGACCG GCTCTACCCG ACCCCAGACC CCGCCATGGA GAAAAGTTTC GCCCGTGCAT Gnnnnnnnnn nTGCCCCACT  ACAAACTCCA CGAACACCAC AGTCCTGGAC ATCCAATCGC CCAACCGATT CGACAACAGG TACTTTGTCA ATTTGGTGAA CTnnGGCCTG TTCACGTCGG ACCAAGATCA ATATGAGGAC  CCCACAACGA GGGACATCGT TACTAGCTTC GCCAAGGACC TGGAATTGTT CTTCGAGAGG TTTGTTCTCG CTATGACCAA GATGGGGCAG CTTGGCCTGT TGACTGGGAC GAAAGGAGAA 
ATCCAAGCCC GCTGCTCGGC CAGGAATTCC TAG 

Retrieve as FASTA