Entry information : SbPrx128 (Sobic.010G115700.1[2.1] / Sb10g010040[1.4])
Entry ID 814
Creation 2007-11-12 (Christophe Dunand)
Last sequence changes 2014-10-16 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-10-16 (Christophe Dunand)
Peroxidase information: SbPrx128 (Sobic.010G115700.1[2.1] / Sb10g010040[1.4])
Name (synonym) SbPrx128 (Sobic.010G115700.1[2.1] / Sb10g010040[1.4])
Class Class III peroxidase    [Orthogroup: Prx025]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Roots
Seedlings
Inducers Acid treatment
Alkaline treatment
Phosphate starvation
Salt stress
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx128
start..stop
S start..stop
SofPrx09 672 0 2..344 1..340
ZmPrx26 644 0 5..344 9..345
SiPrx39 620 0 2..344 1..334
HvPrx16 612 0 2..344 1..334
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 12268868..12269131 264 N° 2 12268477..12268668 192 N° 3 12268088..12268253 166 N° 4 12267331..12267743 413
complement(join(12267331..12267743,12268088..12268253,12268477..12268668,1226886 8..12269131))


exon

Literature and cross-references SbPrx128 (Sobic.010G115700.1[2.1] / Sb10g010040[1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_10 (12269131..12267331)
EST ref. GenBank:   CN127734 [5' end]   CF429192 [3' end]
Cluster/Prediction ref. UniGene:   Sbi.5006
Protein sequence: SbPrx128 (Sobic.010G115700.1[2.1] / Sb10g010040[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   344 (327)
PWM (Da):   %s   37358.26 (35629.5) Transmb domain:   %s   i13-35o
PI (pH):   %s   4.67 (4.60) Peptide Signal:   %s   cut: 18 range:18-344
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MMATGVLCCFRASSSLALCIVFSCLLLAGVPSSLVVAQDPSKLSLEHYSKTCPNVEHVVRTEMECAVRADTRNAALMLRLHFHDCFVQGCDGSVLLDDTATLIGEKQAEQNVNSLKGFELVDKIKEKLEAECPGTVSCADLLAIAARDAVVLVGGPYWDVPVGRLDSKKASLDLANNDIPTAQQGLLTLIAKFWEKGLDATDMVALVGSHTIGFARCANFRDRVYGDFEMTSKYNPSSEAYLSKLKEVCPRDDGDDNISGMDSHTSAVFDNAYFETLIKGEGLLNSDQEMWSSIAGYSTSDTVNKYWADPEAFFKQFSDSMVKMGNITNPAGGEVRKTCRFVNT

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 10, 3 introns) and 6 ESTs.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATGGCCACAGGCGTGTTGTGCTGCTTCAGGGCATCATCATCGTTGGCCCTCTGCATTGTTTTTTCATGTCTCCTCCTGGCCGGCGTGCCCTCCTCGCTTGTGGTGGCGCAGGACCCG
TCGAAGCTGAGCCTGGAGCACTACTCCAAGACCTGCCCCAACGTGGAGCACGTCGTCCGGACGGAGATGGAGTGCGCGGTGCGTGCTGACACGCGCAACGCCGCGCTCATGCTTCGCCTC
CATTTCCATGACTGCTTCGTGCAG
GTCAGTACGTCCTCAGTCAGTTCTGTTTGTTTTTCTTGCATGGTTCACTTCACACACTGACCAAAACCTTCAGCTATGTGCACCGTGCAAAGCTTG
TATCAGTATCAGCCCGATCGATGCAGCTTTTATTCTAATTTGTGCAGCCGCTGAACATCTGAATTGCAATTCTGAACGATGCTACGATCGATCGTCATTGCAGGGCTGCGACGGATCAGT
GCTGCTCGACGACACGGCAACCTTGATCGGAGAGAAGCAGGCAGAGCAGAACGTCAACTCGCTGAAAGGTTTCGAGCTGGTCGACAAGATCAAGGAGAAGCTGGAAGCTGAGTGCCCTGG
AACCGTTTCCTGCGCAGACCTGCTGGCGATTGCAGCTAGGGACGCCGTTGTGCTG
GTAAACCAAACCAAACCAGACCACATCTATCTGCACACGCCCTGCAGTACTGTTTTTCTCTTCTG
TGCGACGCATGGCATTGGCTAGCTTATTTTTTGGTCAGAGCAATTTCACACACATGCACTAGGCGACTGCATTAGCTAGCTTGTTTTACTGTATCCATCATGCATATATATGTTATTATT
ACACATACAGAACTGACGACCGAAACCATGTCTTGCAGGTTGGTGGGCCTTACTGGGATGTCCCAGTAGGAAGGTTGGACTCCAAGAAGGCGAGCCTTGACCTAGCAAACAATGACATCC
CGACTGCTCAGCAAGGCCTCCTCACGCTCATTGCCAAGTTCTGGGAGAAGGGCCTTGATGCCACTGACATGGTGGCCCTCGTCG
GTATGCTGCTGCTCCATATATATATCTATATATANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACACACAAACATATCCAGAGG
TCTGAACAAGGCCTTCTCACTCTCTGTGTCTTTATGTGTGAATAGACCCATATCCACACTCATATATGATACATATATATATATATATATATATATATATATATATATATATATATATAT
ACACACACACACGATTCCAATCTTATATAAAATAAATGTGTACCACGTGCATATATATATATGTGTAGGATCCCACACGATCGGATTCGCCAGGTGCGCGAATTTCAGGGACAGAGTGTA
CGGCGACTTCGAGATGACGTCCAAGTACAACCCGTCGTCGGAGGCGTACCTGAGCAAGCTCAAGGAGGTGTGCCCGCGGGACGACGGCGACGACAACATCAGCGGCATGGACAGCCACAC
CTCGGCGGTGTTCGACAACGCATACTTCGAGACGCTCATCAAGGGCGAGGGCCTCCTCAACTCCGACCAGGAGATGTGGTCCAGCATCGCCGGCTACTCCACCTCCGACACCGTCAACAA
GTACTGGGCCGACCCGGAGGCTTTCTTCAAGCAGTTCTCCGATTCCATGGTGAAGATGGGCAACATCACAAACCCCGCCGGCGGCGAGGTCAGGAAGACCTGCAGATTTGTCAACACATA
G

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGATGGCCACAGGCGTGTTGTGCTGCTTCAGGGCATCATCATCGTTGGCCCTCTGCATTGTTTTTTCATGTCTCCTCCTGGCCGGCGTGCCCTCCTCGCTTGTGGTGGCGCAGGACCCG
TCGAAGCTGAGCCTGGAGCACTACTCCAAGACCTGCCCCAACGTGGAGCACGTCGTCCGGACGGAGATGGAGTGCGCGGTGCGTGCTGACACGCGCAACGCCGCGCTCATGCTTCGCCTC
CATTTCCATGACTGCTTCGTGCAG
GGCTGCGACGGATCAGTGCTGCTCGACGACACGGCAACCTTGATCGGAGAGAAGCAGGCAGAGCAGAACGTCAACTCGCTGAAAGGTTTCGAGCTG
GTCGACAAGATCAAGGAGAAGCTGGAAGCTGAGTGCCCTGGAACCGTTTCCTGCGCAGACCTGCTGGCGATTGCAGCTAGGGACGCCGTTGTGCTG
GTTGGTGGGCCTTACTGGGATGTC
CCAGTAGGAAGGTTGGACTCCAAGAAGGCGAGCCTTGACCTAGCAAACAATGACATCCCGACTGCTCAGCAAGGCCTCCTCACGCTCATTGCCAAGTTCTGGGAGAAGGGCCTTGATGCC
ACTGACATGGTGGCCCTCGTCG
GATCCCACACGATCGGATTCGCCAGGTGCGCGAATTTCAGGGACAGAGTGTACGGCGACTTCGAGATGACGTCCAAGTACAACCCGTCGTCGGAGGCG
TACCTGAGCAAGCTCAAGGAGGTGTGCCCGCGGGACGACGGCGACGACAACATCAGCGGCATGGACAGCCACACCTCGGCGGTGTTCGACAACGCATACTTCGAGACGCTCATCAAGGGC
GAGGGCCTCCTCAACTCCGACCAGGAGATGTGGTCCAGCATCGCCGGCTACTCCACCTCCGACACCGTCAACAAGTACTGGGCCGACCCGGAGGCTTTCTTCAAGCAGTTCTCCGATTCC
ATGGTGAAGATGGGCAACATCACAAACCCCGCCGGCGGCGAGGTCAGGAAGACCTGCAGATTTGTCAACACATAG

Retrieve as FASTA