Entry information : SmRboh10-1_16 (SmRboh10a_16)
Entry ID 8143
Creation 2011-02-23 (Christophe Dunand)
Last sequence changes 2011-02-23 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-02-23 (Christophe Dunand)
Peroxidase information: SmRboh10-1_16 (SmRboh10a_16)
Name (synonym) SmRboh10-1_16 (SmRboh10a_16)
Class Respiratory burst oxidase homolog    [Orthogroup: Rboh001]
Taxonomy Eukaryota Viridiplantae Streptophyta Isoetopsida Selaginellaceae Selaginella
Organism Selaginella moellendorffii    [TaxId: 88036 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SmRboh10-1_16
start..stop
S start..stop
SmRboh07-2_1 1742 0 1..845 1..845
SmRboh07-1_16 1244 0 174..845 1..695
SmRboh02-2_137 930 0 14..845 59..902
SmRboh02-1_19 916 0 14..845 52..895
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 2215219..2215804 586 N° 2 2214774..2214933 160 N° 3 2214632..2214680 49 N° 4 2214054..2214386 333
N° 5 2213488..2213874 387 N° 6 2213325..2213420 96 N° 7 2213152..2213267 116 N° 8 2213001..2213103 103
N° 9 2212854..2212927 74 N° 10 2212642..2212801 160 N° 11 2212445..2212600 156 N° 12 2212270..2212398 129
N° 13 2212130..2212208 79 N° 14 2211960..2212069 110  
complement(join(2211960..2212069,2212130..2212208,2212270..2212398,2212445..2212 600,2212642..2212801,2212854..2212927,2213001..2213103,2213152..2213267,2213325. .2213420,2213488..2213874,2214054..2214386,2214632..2214680,2214774..2214933,221 5219..2215804))


exon

Literature and cross-references SmRboh10-1_16 (SmRboh10a_16)
DNA ref. Phytozome 11:   scaffold_16 (2215804..2211960)
Protein sequence: SmRboh10-1_16 (SmRboh10a_16)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   845
PWM (Da):   %s   96603.72 Transmb domain:   %s   o319-341i370-392o428-450i475-497o507-524i657-674o
PI (pH):   %s   9.24
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MEVCPKSPGDEDNVDESRMLELTIDVRDDNVRVRSVSALDDRCDDPQPSGRITLASLLRHTTQSGRFISKQISQELELIRNWAASTPRSRSRSRPSSPDRDRLVKILALSRSNSAVSSRSSASQQQPRIRKQQSGDLFLARSRSGAETALQGLRYISRAIESADQKAVWEAVEMRFQQLAKPDGMLDRGDFGLCIGMPDSREFTGELFDALARRKHQNLQCINKEELYEFWLQLSDQSFDSRIQIFFDMCDKDADGRITEEEVKLWQLESLMLGQFASLAQDGYLNYSQTWSQTLAFEQSGKIILCARKIKYFVIENWQRVWVVGLWIFAMCGLFLWKFFAYKQTSAFKLLGYCLCSAKGAAETLKLNMALVLLPIIAGAIVAGVGIHATVHLACDFPRIIRASEEEFMIYLGRGFHYKQPTYVGILVSIEGVTGISMVIMMSIAFVLATRWFRRNLVRLPWPLHRLTGFNAFWYSHHLFMVVYVLLLLHSIFLFFTNDWVAKSTWMYLSVPVLLYSVERILSAFRARHFTVQVVKAAIHPGNVLALKMTKPPTFKYKSGMYLFIKCISISPFEWHPFSITSAPSDRHLSVHIRTVGDWTEELRRIFSALGGLAEKENVLESESSDISIIRHRFPKLQIDGPYGAPAQDYQKYDVLLLVGIGIGATPFISVLKDMLNQIKLADQQFLSMKQIRSPRKRNERKLQCPTNAYFYWVTREQGSFEWFRGVLNEVAEIDNKAVIEMHNYLTSVYEEGDARSALITMMQAFHHAKNGVDIVSGTRVRTHFARPKWYKVFSRLANIHTNSRIGVFYCGPMVLARELDALSSEFNQISNSKFEFHKENF

Retrieve as FASTA  
Remarks Allelic variant not found in scaffold_1!!!
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAGTATGTCCTAAATCGCCAGGGGACGAGGACAATGTGGACGAATCCAGGATGCTGGAATTGACAATCGATGTGCGCGACGACAATGTAAGGGTGAGGAGCGTGAGCGCGCTGGAC
GATCGCTGCGACGATCCACAGCCCAGCGGCAGGATCACGCTGGCGAGCTTGCTGCGCCACACGACCCAGTCGGGGCGATTCATCTCCAAGCAAATCTCCCAGGAGCTGGAGCTGATTCGC
AACTGGGCGGCGAGCACCCCGCGATCGAGGTCGCGGTCGCGGCCCAGCTCGCCGGATCGCGACCGCCTGGTGAAGATCCTGGCGCTGAGCAGGAGCAATAGCGCGGTGTCGTCGCGATCG
TCGGCATCGCAGCAGCAGCCGCGAATCCGCAAGCAGCAGAGTGGGGATCTGTTCCTGGCGCGATCGAGATCCGGGGCCGAGACTGCGTTGCAGGGGCTCCGATACATCAGCCGCGCGATC
GAGAGCGCGGACCAAAAGGCGGTGTGGGAGGCGGTGGAGATGAGGTTTCAACAGCTCGCCAAGCCGGATGGGATGCTCGATCGTGGCGATTTTGGCCTGTGCATTG
GTGAGCAATTCCAA
TTCCTCTCTCTCTCTCTCTCACACACACACACACACACACTCACAAATTTCCATGATGGATCAAAGTTCTTGCATGATTGGATTGCCTCTACAGGTTCTACATGTTTCTCGTGGTCCATA
GCAAGAATTTCTTGACACGTTTCCAGACTTTTGACATTGTTCTTCCCCATTTTGCGTTCTTCTCCTCCCAAGCTCACATAAAACTTTTCTTTTTCTTTTATCTGATTTCTCGGCTGAAAT
CTCTCAAGCTTGCAATGGTTTTTTCTTCCAGGGATGCCAGACTCGAGGGAATTCACTGGCGAGCTTTTCGACGCGCTTGCACGGAGGAAGCACCAAAACCTCCAGTGCATTAACAAAGAG
GAGCTCTACGAGTTTTGGTTGCAGCTATCTGACCAAAGCTTCGACTCCAGGATCCAAATCTTTTTCGATAT
GTAAGCGCATCACTCCCACTCGTCTCACGTTTTAAATAATCTCATTGCC
CGCCACCTTCTTATCGTTTTCTATCTTGTTCTCCTATAATTTAGGTGTGACAAGGACGCAGATGGACGTATCACCGAGGAAGAAGTGAAAGAGGTGCGTGGAATTTAGCTGATAGGTTCC
ACTTCTATCTTAAATACACTACTCTGTCTTTGGTTTTCGTCCCAGATTATTATTCTCAGCGCTTCGGCCAACAAGCTATCAAAGCTCAACGAGCAAGCCGAGGAATATGCGGCCCTCATC
ATGGAAGAGCTGGATCCTAGCGGAATCGGCTACATTGAAGTAAGTTTCAAGTTTATAAAACCTTCACCACCTTTTCAATCTCTTCTTTGATTTGCTAGCTCTGGCAGCTCGAGAGTTTGA
TGCTGGGACAATTCGCATCACTAGCACAAGATGGTTATCTCAATTACAGCCAAACTTGGAGCCAGACTCTGGCATTTGAACAATCCGGGAAGATCATACTCTGTGCCAGGAAGATCAAAT
ACTTCGTCATCGAGAACTGGCAGCGTGTCTGGGTGGTGGGCTTGTGGATCTTTGCAATGTGTGGGCTTTTTCTCTGGAAGTTCTTCGCATACAAGCAAACCTCGGCTTTCAAGCTTCTCG
GCTACTGCCTTTGCTCGGCCAAAGGAGCCGCCGAGACACTCAAGCTCAACATGGCTTTGGTTCTCCTCCCG
GTTTGCAGGAACACCATCACTTGGCTTCGCTCCACGATCGTGGGAAGTG
TTGTTCCATTCGATGACAGTCTAAACTTCCACAAGGCAAGCGTTTAGAACTAAAGTTTCTGAGAACCAAATAGTGAAGTAGAAAGTTCGTGCTGTGGGTTCTAAGTTCCTGGTGACTGAT
ACGTTTGCAGATAATTGCAGGAGCCATCGTTGCGGGGGTTGGAATCCACGCGACGGTTCATCTCGCGTGTGATTTTCCCAGGATCATTCGGGCGAGCGAGGAAGAGTTTATGATCTATCT
CGGGCGAGGGTTCCACTACAAGCAGCCAACTTACGTGGGGATCTTGGTTTCTATAGAGGGTGTTACAGGGATTAGCATGGTGATTATGATGAGCATCGCGTTCGTGCTGGCAACGAGATG
GTTTCGTAGGAATCTCGTGAGGCTCCCTTGGCCCTTGCACAGGTTGACGGGGTTTAACGCATTTTGGTACTCCCACCACCTTTTCATGGTGGTTTACGTGCTTTTGCTGCTTCACTCCAT
CTTCTTATTTTTCACAAACGACTGGGTGGCGAAATCA
GTAAGCTGGTTACAGTTTGTTTTCCTAGCATGTTGTCCTAACAAAAGTATGAGTTTTGATCTGGTAGACATGGATGTATCTCT
CTGTGCCAGTGCTTCTTTACTCAGTGGAGAGGATCCTCTCAGCATTTCGAGCTAGACATTTCACAGTACAAGTTGTCAAG
GTGAGAAGTTTCATTGGATTGTGGAAGTTGCTGTTAAACT
CTTTTGTGTATATGAAGGCTGCTATTCATCCTGGAAATGTTCTTGCCTTGAAGATGACAAAGCCACCTACGTTCAAGTATAAGAGTGGCATGTATCTATTTATCAAATGTATATCCATCT
CTCCTTTTGAATG
GTAAGTTAAAGAAAACATTATTTTGGAAGCTATTTACATTGTTTTCAGGCATCCATTTTCTATTACCTCCGCTCCTAGTGACAGGCATTTAAGTGTGCATATACGAA
CTGTGGGGGACTGGACGGAGGAGCTTAGAAGAATCTTCTCCAAG
GTAAGTAGAAAACACTTAGGATAGTATTGTTATTTTGCTTAGGTTTGTTCAAAAGATCTCTTTTGTTTTTCAGGCA
CTTGGAGGTCTTGCAGAGAAAGAAAATGTTCTGGAGAGTGAGAGCAGCGACATTAGCATCATAAGACACAG
GTACACTATTCAAAGGTTACTTATAACTTTTAAATTGCAAGCTTTCTCT
CAGATTCCCAAAGCTTCAAATCGATGGACCTTATGGAGCTCCAGCCCAGGATTATCAGAAATATGATGTTTTACTGCTCGTTGGAATTGGAATTGGAGCAACGCCTTTCATCAGCGTTCT
CAAAGACATGCTAAACCAAATAAAACTGGCAGATCAACAACAG
GTATTATATCTTCATACCTATTATTATTATTGTTTTGCCAGTTCTTGTCGATGAAGCAGATTCGAAGCCCCAGGAAA
CGAAATGAAAGAAAGCTGCAATGTCCCACGAATGCATATTTCTACTGGGTCACTCGAGAGCAAGGCTCGTTCGAGTGGTTTAGAGGAGTGTTAAACGAAGTTGCCGAGATTGACAACAAG
GTGATGCCTGATCATGACAATATCACACTAAAATATATTCTTGCAGGCAGTGATCGAGATGCATAACTATCTCACCAGCGTTTATGAAGAAGGGGATGCTCGCTCAGCTCTCATCACAAT
GATGCAAGCTTTTCATCATGCCAAGAATGGTGTTGACATTGTCTCAGGAACAAGA
GTAAGATCTTTGATCTGATTTCATTTTGATTGCTTATAATAAATCTCTTACCAATACTCAGGTTA
GAACTCACTTTGCTCGACCCAAATGGTATAAAGTATTTTCCAGGCTTGCCAACATTCATACAAATTCAAGAATAG
GTGAGTGAGATTTTCTATTTTTCTTTTTTATTTTCTTTCTTATTG
CATTTGCTTATGAAGGTGTCTTCTATTGTGGACCTATGGTTTTAGCTAGGGAGCTTGATGCATTATCAAGTGAATTTAACCAAATATCCAACTCAAAATTTGAGTTTCACAAAGAAAATT
TTTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAAGTATGTCCTAAATCGCCAGGGGACGAGGACAATGTGGACGAATCCAGGATGCTGGAATTGACAATCGATGTGCGCGACGACAATGTAAGGGTGAGGAGCGTGAGCGCGCTGGAC
GATCGCTGCGACGATCCACAGCCCAGCGGCAGGATCACGCTGGCGAGCTTGCTGCGCCACACGACCCAGTCGGGGCGATTCATCTCCAAGCAAATCTCCCAGGAGCTGGAGCTGATTCGC
AACTGGGCGGCGAGCACCCCGCGATCGAGGTCGCGGTCGCGGCCCAGCTCGCCGGATCGCGACCGCCTGGTGAAGATCCTGGCGCTGAGCAGGAGCAATAGCGCGGTGTCGTCGCGATCG
TCGGCATCGCAGCAGCAGCCGCGAATCCGCAAGCAGCAGAGTGGGGATCTGTTCCTGGCGCGATCGAGATCCGGGGCCGAGACTGCGTTGCAGGGGCTCCGATACATCAGCCGCGCGATC
GAGAGCGCGGACCAAAAGGCGGTGTGGGAGGCGGTGGAGATGAGGTTTCAACAGCTCGCCAAGCCGGATGGGATGCTCGATCGTGGCGATTTTGGCCTGTGCATTG
GGATGCCAGACTCG
AGGGAATTCACTGGCGAGCTTTTCGACGCGCTTGCACGGAGGAAGCACCAAAACCTCCAGTGCATTAACAAAGAGGAGCTCTACGAGTTTTGGTTGCAGCTATCTGACCAAAGCTTCGAC
TCCAGGATCCAAATCTTTTTCGATAT
GTGTGACAAGGACGCAGATGGACGTATCACCGAGGAAGAAGTGAAAGAGCTCTGGCAGCTCGAGAGTTTGATGCTGGGACAATTCGCATCACTA
GCACAAGATGGTTATCTCAATTACAGCCAAACTTGGAGCCAGACTCTGGCATTTGAACAATCCGGGAAGATCATACTCTGTGCCAGGAAGATCAAATACTTCGTCATCGAGAACTGGCAG
CGTGTCTGGGTGGTGGGCTTGTGGATCTTTGCAATGTGTGGGCTTTTTCTCTGGAAGTTCTTCGCATACAAGCAAACCTCGGCTTTCAAGCTTCTCGGCTACTGCCTTTGCTCGGCCAAA
GGAGCCGCCGAGACACTCAAGCTCAACATGGCTTTGGTTCTCCTCCCG
ATAATTGCAGGAGCCATCGTTGCGGGGGTTGGAATCCACGCGACGGTTCATCTCGCGTGTGATTTTCCCAGG
ATCATTCGGGCGAGCGAGGAAGAGTTTATGATCTATCTCGGGCGAGGGTTCCACTACAAGCAGCCAACTTACGTGGGGATCTTGGTTTCTATAGAGGGTGTTACAGGGATTAGCATGGTG
ATTATGATGAGCATCGCGTTCGTGCTGGCAACGAGATGGTTTCGTAGGAATCTCGTGAGGCTCCCTTGGCCCTTGCACAGGTTGACGGGGTTTAACGCATTTTGGTACTCCCACCACCTT
TTCATGGTGGTTTACGTGCTTTTGCTGCTTCACTCCATCTTCTTATTTTTCACAAACGACTGGGTGGCGAAATCA
ACATGGATGTATCTCTCTGTGCCAGTGCTTCTTTACTCAGTGGAG
AGGATCCTCTCAGCATTTCGAGCTAGACATTTCACAGTACAAGTTGTCAAG
GCTGCTATTCATCCTGGAAATGTTCTTGCCTTGAAGATGACAAAGCCACCTACGTTCAAGTATAAGAGT
GGCATGTATCTATTTATCAAATGTATATCCATCTCTCCTTTTGAATG
GCATCCATTTTCTATTACCTCCGCTCCTAGTGACAGGCATTTAAGTGTGCATATACGAACTGTGGGGGACTGG
ACGGAGGAGCTTAGAAGAATCTTCTCCAAG
GCACTTGGAGGTCTTGCAGAGAAAGAAAATGTTCTGGAGAGTGAGAGCAGCGACATTAGCATCATAAGACACAGATTCCCAAAGCTTCAA
ATCGATGGACCTTATGGAGCTCCAGCCCAGGATTATCAGAAATATGATGTTTTACTGCTCGTTGGAATTGGAATTGGAGCAACGCCTTTCATCAGCGTTCTCAAAGACATGCTAAACCAA
ATAAAACTGGCAGATCAACAACAG
TTCTTGTCGATGAAGCAGATTCGAAGCCCCAGGAAACGAAATGAAAGAAAGCTGCAATGTCCCACGAATGCATATTTCTACTGGGTCACTCGAGAG
CAAGGCTCGTTCGAGTGGTTTAGAGGAGTGTTAAACGAAGTTGCCGAGATTGACAACAAG
GCAGTGATCGAGATGCATAACTATCTCACCAGCGTTTATGAAGAAGGGGATGCTCGCTCA
GCTCTCATCACAATGATGCAAGCTTTTCATCATGCCAAGAATGGTGTTGACATTGTCTCAGGAACAAGA
GTTAGAACTCACTTTGCTCGACCCAAATGGTATAAAGTATTTTCCAGGCTT
GCCAACATTCATACAAATTCAAGAATAG
GTGTCTTCTATTGTGGACCTATGGTTTTAGCTAGGGAGCTTGATGCATTATCAAGTGAATTTAACCAAATATCCAACTCAAAATTTGAGTTT
CACAAAGAAAATTTTTAA

Retrieve as FASTA