Entry information : SbPrx07 (Sobic.001G277000.1[2.1]Sb01g027330[1.4])
Entry ID 819
Creation 2005-12-29 (Christophe Dunand)
Last sequence changes 2005-12-29
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-01 (Messaoudi)
Peroxidase information: SbPrx07 (Sobic.001G277000.1[2.1]Sb01g027330[1.4])
Name (synonym) SbPrx07 (Sobic.001G277000.1[2.1]Sb01g027330[1.4])
Class Class III peroxidase    [Orthogroup: Prx054]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue types Leaves
Roots
Seedlings
Inducers Colletotrichum inoculation
Dark growth
Drought
Oxidative stress
Pathogen interaction
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx07
start..stop
S start..stop
ZmPrx31 602 0 1..338 2..340
SiPrx147 512 0 25..338 25..341
SiPrx149 501 1e-180 1..338 1..342
OsPrx125 489 1e-175 32..338 32..336
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 46977047..46977280 234 N° 2 46977447..46977644 198 N° 3 46978277..46978439 163 N° 4 46978568..46978989 422
join(46977047..46977280,46977447..46977644,46978277..46978439,46978568..46978989 )


exon

Literature and cross-references SbPrx07 (Sobic.001G277000.1[2.1]Sb01g027330[1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 11:   chromosome_1 (46977047..46978989)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.2192.1
Protein sequence: SbPrx07 (Sobic.001G277000.1[2.1]Sb01g027330[1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa): %sProtein length in amino acid 338 (307)
PWM (Da): %sMolecular Weight of protein
Protein Mw is calculated by the addition of average isotopic masses
of amino acids in the protein and the average isotopic mass of one water molecule.
Molecular weight values are given in Dalton (Da).
35947.86 (32963.3) Transmb domain: %sTransmembrane domain
Calculation done with TMHMM
The topology is given as the position of the transmembrane helices
separated by i if the loop is on the inside or o if it is on the outside.
For example i7-29o44-66i87-109o means that it starts on the inside,
has a predicted TMH at position 7 to 29, the outside, then a TMH at position 44-66 etc.
i12-31o
PI (pH): %sIso electric point of protein
Calculation done with EMBOSS parameters.
Please see Dataset for pKi calculation for more information
6.29 (5.30) Peptide Signal: %sProtein signal for mature protein.
if exist :cut position of signal peptide.
range: start-end pos of mature protein
cut: 32 range:32-338
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MASSSPHHRAAVVAGVLLVVAAALCSRGAMAQLTADYYDCTCPDAYNIVKNVLIEAHKSDVRIYASLTRLHFHDCFVQGCDGSVLLDALPGVANSTEKLAPANNNSARGFPVVDKVKAALENACPGVVSCADILALAAEISVELSGGPKWSVLLGRLDSKTANFKSAENLPSPFDNLTVLQQKFTAVGLHTVDLVALSGAHTFGRVQCQFVTSRLYNFSGTGRPDPTLNGGYRAFLTQRCPLNGNGSALNDLDPTTPNLFDNHYYTNLEVNRGFLNSDQELKSSPPAQGVTAPIVDQFASSQDAFFDNFAQSMINMGNIQPLTDPSKGEVRCNCRVAN

Retrieve as FASTA  
Remarks TIGR database sequence from 18 EST. Complete genomic DNA (Predicted with Softberry) (3 introns)
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCCTCTAGCCCTCATCATCGTGCAGCCGTCGTCGCCGGCGTGCTGCTGGTGGTGGCGGCCGCCCTGTGCTCCCGCGGCGCCATGGCGCAGCTGACCGCGGACTACTACGACTGC
ACATGCCCTGACGCCTACAACATCGTGAAGAATGTGCTCATCGAGGCGCACAAGTCGGACGTGCGCATCTACGCCAGCCTCACCCGCCTCCATTTCCACGACTGCTTCGTCCAG
GTAACT
ACCATCAACAAACGATAGCCGCCATCATGCTTGCAATGTTCGTTCGGCTGATAAATCATGGCAGGAAATATTGTTGGCTAATTTGTTATAAGAAAAAAACACAGCTAATAAATTCAAGCG
AACAGGCTAACTTTTTGCCGTATCTGTTTGTCATCTTTAGGGCTGCGACGGCTCGGTGCTGTTGGACGCCTTGCCGGGGGTGGCCAACTCTACGGAGAAATTGGCGCCGGCGAACAACAA
CTCGGCGCGGGGGTTCCCGGTGGTGGACAAAGTGAAGGCGGCGCTGGAGAACGCCTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCAGAGATCTCCGTCGAGCTG
GT
ACGTACGTAATAGGTGTCGGTAGTCTTACTAAACTATTCATGAAGATGGATGGATGCATAGCAGTGATGTGCGTAGAACTGGTAGGTTATCCGTAGTTTTCAACGGGCAACGGGCACATG
CACATGCATGCCGGTTTAAGGTTTGAAAATAAAGTATGCTAGCTCATAATTAACTCCGTGTTGTTAGCACCTAATATCTATCAGGATACTTCAGTTCTACTAATTGGATCTTGGACTTCA
TCAGTTAATTACTACTACTAGCTAGTTCGGTAATGAGTATTTGAATTTTTTTCAATACGCAAAAAGGTTTGTGCACCATTGTATTAAGGTTGAGAAAGAAAGTTTTTACAACGACATGCC
ATGACACGTACGGGTGCCCTACTAGGAGGACCCTATGGTTTTACAATAAGCTTCTACACAGTAGGAACACGCATATCATGCCGACACAGATGCCAAACAAAAGGGTTTGTCGTGCTGCAA
ACACAGGCCCCATATGCGCCTACTTTCTTGAACATGCAATGCATGCCGGGATCCATTATTGATCTAATACGACAACATACTACTGATCAGTGCCCATGCTCTGGCTAGACACCTGTAACT
AATTGATCTCGTTTCAATATGTACTTACAGTCCGGAGGCCCAAAGTGGAGCGTGCTTCTTGGGAGGCTAGACAGCAAGACGGCCAACTTCAAAAGCGCAGAGAACCTGCCGTCGCCCTTC
GACAACCTCACCGTGCTGCAGCAAAAGTTCACCGCCGTCGGCCTTCACACCGTCGACCTCGTCGCCCTCTCAG
GTATATATGGTGCCCATCAATCTCACATCGATCATTCACTGCATGCT
GTCGATCGACCGATTCACCAGCCATCAAACTTAACTCTGCTGTCTGCAATGCCTGCACAACACAACAACAAATGCATGCAGGGGCTCACACATTTGGCCGGGTGCAGTGCCAGTTCGTGA
CGAGCCGGCTGTACAACTTCAGCGGCACCGGCCGGCCGGACCCTACGCTCAACGGCGGCTACCGGGCGTTCCTGACCCAGAGGTGCCCTCTGAACGGCAACGGGTCAGCCCTGAACGACT
TGGATCCCACGACGCCCAACCTCTTCGACAACCACTACTACACCAACCTCGAGGTGAACCGAGGCTTCCTCAACTCCGATCAGGAGCTCAAGTCCTCGCCGCCGGCGCAGGGCGTCACGG
CGCCCATCGTCGACCAGTTCGCCAGCAGCCAGGACGCCTTCTTCGACAACTTCGCGCAGTCCATGATCAACATGGGCAACATTCAGCCACTCACGGACCCCTCCAAGGGAGAAGTCCGCT
GCAACTGCCGAGTGGCTAATTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTTCCTCTAGCCCTCATCATCGTGCAGCCGTCGTCGCCGGCGTGCTGCTGGTGGTGGCGGCCGCCCTGTGCTCCCGCGGCGCCATGGCGCAGCTGACCGCGGACTACTACGACTGC
ACATGCCCTGACGCCTACAACATCGTGAAGAATGTGCTCATCGAGGCGCACAAGTCGGACGTGCGCATCTACGCCAGCCTCACCCGCCTCCATTTCCACGACTGCTTCGTCCAG
GGCTGC
GACGGCTCGGTGCTGTTGGACGCCTTGCCGGGGGTGGCCAACTCTACGGAGAAATTGGCGCCGGCGAACAACAACTCGGCGCGGGGGTTCCCGGTGGTGGACAAAGTGAAGGCGGCGCTG
GAGAACGCCTGCCCCGGCGTCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCAGAGATCTCCGTCGAGCTG
TCCGGAGGCCCAAAGTGGAGCGTGCTTCTTGGGAGGCTAGACAGCAAG
ACGGCCAACTTCAAAAGCGCAGAGAACCTGCCGTCGCCCTTCGACAACCTCACCGTGCTGCAGCAAAAGTTCACCGCCGTCGGCCTTCACACCGTCGACCTCGTCGCCCTCTCAG
GGGCT
CACACATTTGGCCGGGTGCAGTGCCAGTTCGTGACGAGCCGGCTGTACAACTTCAGCGGCACCGGCCGGCCGGACCCTACGCTCAACGGCGGCTACCGGGCGTTCCTGACCCAGAGGTGC
CCTCTGAACGGCAACGGGTCAGCCCTGAACGACTTGGATCCCACGACGCCCAACCTCTTCGACAACCACTACTACACCAACCTCGAGGTGAACCGAGGCTTCCTCAACTCCGATCAGGAG
CTCAAGTCCTCGCCGCCGGCGCAGGGCGTCACGGCGCCCATCGTCGACCAGTTCGCCAGCAGCCAGGACGCCTTCTTCGACAACTTCGCGCAGTCCATGATCAACATGGGCAACATTCAG
CCACTCACGGACCCCTCCAAGGGAGAAGTCCGCTGCAACTGCCGAGTGGCTAATTAA

Retrieve as FASTA