Entry information : PtrAPx-R
Entry ID 8208
Creation 2011-03-17 (Christophe Dunand)
Last sequence changes 2011-05-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2011-05-10 (Christophe Dunand)
Peroxidase information: PtrAPx-R
Name PtrAPx-R
Class Ascorbate peroxidase related    [Orthogroup: APx-R001]
Taxonomy Eukaryota Bacillariophyta Bacillariophyceae Phaeodactylaceae Phaeodactylum
Organism Phaeodactylum tricornutum    [TaxId: 2850 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PtrAPx-R
start..stop
S start..stop
TpsAPx-R 313 5e-107 39..327 5..297
LeAPx-R 162 1e-47 8..322 64..321
CclAPx-R 160 5e-47 40..321 96..330
CsAPx-R 160 5e-47 40..321 96..330
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 909336..910319 984  
complement(join((909336..910319))


exon

Literature and cross-references PtrAPx-R
DNA ref. GenBank:   CM000613.1 (910319..909336)
mRNA ref. GenBank:   XM_002181064.1
Cluster/Prediction ref. UniGene:   Ptc.1241
Protein sequence: PtrAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   327 (311)
PWM (Da):   %s   36028.89 (34331.9)  
PI (pH):   %s   8.66 (8.23) Peptide Signal:   %s   cut: 33 range:17-327
Sequence
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Send to Peroxiscan
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MQLLPITRAA FLGTLALAPQ LLPFQRLPNF QALDEVPSEK AAQTINGSKI LRERVREQLA RDTSLAGPLL RLAFHDATTF ESSNGFQSGG SNGSIRFELE KMENRGLIRP LHVVEAIHGE  INKTYGISLA DAIALAGAVA VEQAGGPFIP IRLGRSDVSR SDPTYLRKTQ RRETERSVVA ETMPNPGLDA DGLRLYFERL GLSESEFVAL SGAHSLGRHV SLLGMSPSCL KNLTQKCLEE 
APTLLPFVSS SVDRFDNSYF PALMKWNSRS VFIGEVAFIP TDVALVVDKG LYRHVVRFAD DQSLYFRTFR RAYQKLVENT ATSVLRY 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 10, no intron) and 22 or 4 ESTs.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAACTTT TGCCGATCAC GCGGGCAGCC TTCCTCGGCA CACTAGCACT CGCGCCACAG TTGCTGCCGT TTCAGCGACT CCCTAATTTC CAAGCACTCG ACGAAGTTCC CTCAGAAAAA  GCCGCACAAA CTATAAATGG GTCCAAGATC CTTCGTGAAC GAGTCCGTGA GCAGCTTGCC CGAGATACCT CATTGGCAGG TCCCTTGTTG CGTTTGGCCT TTCACGACGC CACCACATTC  GAAAGTTCCA ACGGCTTTCA GTCAGGAGGC TCCAACGGAT CCATCCGCTT TGAATTGGAA AAGATGGAGA ACCGGGGATT GATTCGACCT TTGCACGTCG TCGAGGCAAT TCATGGCGAA  ATCAACAAAA CCTACGGTAT TTCCCTAGCC GACGCCATCG CCCTGGCAGG CGCAGTCGCT GTAGAGCAAG CTGGAGGGCC GTTTATTCCC ATACGACTCG GACGGTCGGA TGTGTCTAGA  TCCGATCCAA CCTATTTGCG AAAAACGCAA CGTAGAGAGA CTGAGCGATC TGTGGTTGCT GAGACCATGC CAAATCCAGG TCTCGATGCG GACGGGCTTC GTTTGTATTT TGAGCGTCTT  GGCTTGTCAG AGTCCGAGTT TGTGGCTCTA TCAGGGGCGC ATAGCTTAGG GCGTCACGTG TCTCTGCTGG GCATGTCTCC AAGTTGCTTG AAAAACTTGA CCCAGAAGTG CCTAGAAGAG  GCACCCACAC TCCTGCCCTT TGTTTCTTCG TCAGTGGATC GGTTTGACAA CTCTTATTTT CCAGCACTGA TGAAATGGAA CAGTCGCAGT GTTTTTATTG GTGAGGTGGC GTTCATTCCT  ACGGATGTAG CGTTGGTCGT AGACAAAGGC TTGTATCGCC ATGTAGTACG ATTTGCGGAC GACCAGTCCT TATATTTTCG GACCTTCCGA CGCGCCTACC AGAAGCTGGT GGAAAACACC 
GCAACATCAG TATTGCGCTA CTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAACTTT TGCCGATCAC GCGGGCAGCC TTCCTCGGCA CACTAGCACT CGCGCCACAG TTGCTGCCGT TTCAGCGACT CCCTAATTTC CAAGCACTCG ACGAAGTTCC CTCAGAAAAA  GCCGCACAAA CTATAAATGG GTCCAAGATC CTTCGTGAAC GAGTCCGTGA GCAGCTTGCC CGAGATACCT CATTGGCAGG TCCCTTGTTG CGTTTGGCCT TTCACGACGC CACCACATTC  GAAAGTTCCA ACGGCTTTCA GTCAGGAGGC TCCAACGGAT CCATCCGCTT TGAATTGGAA AAGATGGAGA ACCGGGGATT GATTCGACCT TTGCACGTCG TCGAGGCAAT TCATGGCGAA  ATCAACAAAA CCTACGGTAT TTCCCTAGCC GACGCCATCG CCCTGGCAGG CGCAGTCGCT GTAGAGCAAG CTGGAGGGCC GTTTATTCCC ATACGACTCG GACGGTCGGA TGTGTCTAGA  TCCGATCCAA CCTATTTGCG AAAAACGCAA CGTAGAGAGA CTGAGCGATC TGTGGTTGCT GAGACCATGC CAAATCCAGG TCTCGATGCG GACGGGCTTC GTTTGTATTT TGAGCGTCTT  GGCTTGTCAG AGTCCGAGTT TGTGGCTCTA TCAGGGGCGC ATAGCTTAGG GCGTCACGTG TCTCTGCTGG GCATGTCTCC AAGTTGCTTG AAAAACTTGA CCCAGAAGTG CCTAGAAGAG  GCACCCACAC TCCTGCCCTT TGTTTCTTCG TCAGTGGATC GGTTTGACAA CTCTTATTTT CCAGCACTGA TGAAATGGAA CAGTCGCAGT GTTTTTATTG GTGAGGTGGC GTTCATTCCT  ACGGATGTAG CGTTGGTCGT AGACAAAGGC TTGTATCGCC ATGTAGTACG ATTTGCGGAC GACCAGTCCT TATATTTTCG GACCTTCCGA CGCGCCTACC AGAAGCTGGT GGAAAACACC 
GCAACATCAG TATTGCGCTA CTGA 

Retrieve as FASTA