Entry information : NtDiOx01-1B (NtDiOx01b)
Entry ID 8257
Creation 2011-04-12 (Christophe Dunand)
Last sequence changes 2011-04-26 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2011-04-26 (Christophe Dunand)
Peroxidase information: NtDiOx01-1B (NtDiOx01b)
Name (synonym) NtDiOx01-1B (NtDiOx01b)
Class Alpha-dioxygenase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Nicotiana
Organism Nicotiana tabacum    [TaxId: 4097 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value NtDiOx01-1B
start..stop
S start..stop
VvDiOx02 848 0 5..609 1..637
PtDiOx01 838 0 8..609 8..641
HaDiOx03 753 0 5..609 5..640
NatDiOx01 638 0 274..611 293..643
NatDiOx01 452 2e-152 1..221 1..221
Literature and cross-references NtDiOx01-1B (NtDiOx01b)
DNA ref. GenBank:   ET677242.1 [Fragment]
EST ref. GenBank:   FS436976.1 [5' end]
Protein sequence: NtDiOx01-1B (NtDiOx01b)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   611
PWM (Da):   %s   64338.92  
PI (pH):   %s   7.22
Sequence
Send to BLAST
Send to Peroxiscan
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MSLVMASLKN LLLSPLRGFI HKDFHDIFER MTLLDKLFFL IVHFVDKLNL WHRLPVFLGL LYLGARRHLH QEYNLINVGK TPVGVRSNPA DHPYRTADGK YNDPFNEGAG SELSFFGRNM  LPVHQHNQLK KPDPMVVATK LLARRNFVDT GKQFNMIAAS WIQFMIHDWI DHLEDTKQIE LKAPKEVASQ CPLKSFKFFK TKEIPTGFYD IKTGHLNTRT PGGMEVYLWK Qxxxxxxxxx  xxxxxxxxxx xxxxxxxxxx xxxxxxxxxx xxxLQKEYPE LKDEDLYRHA RLVTSAVIAK VHTIDWTVEL LKTDTMLAGM RANWYGLLGK KFKDTFGHVG GSILSGFVGM KKPENYGVPY  SLTEEFVCVY RMHQLLPDKL QLRNIDAKPG PNKSLPLTNE xxxxxxxxxx xxxMGHQACG ALELWNYPVW MRDLVAQNVD GTDRPDHVDL AALEIYRDRE RSVARYNEFR RGMLQIPISK  WEDLTDDEEV INTLREVYGD DVEELDLMVG MAAEKKIKGF AISETAFFIF LIMASRRLEA DRFFTSNYKE ETYTKKGLEW VNTTESLKDV LDRHYPEITE KWMNSSSAFS VWDSTPEPHN 
PIPLYFRVPP Q* 

Retrieve as FASTA  
Remarks Partial sequence from ESTs and GSS. No overlap between contig 5', 3' and GSS.
cDNA
Send to BLAST
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ATGGGTCACC AAGCCTGTGG AGCTCTTGAG CTTTGGAACT ATCCAGTGTG GATGAGGGAT CTTGTTGCTC AAAATGTGGA TGGGACTGAT AGGCCAGATC ATGTTGATCT TGCAGCCCTT  GAAATTTATA GGGACAGAGA AAGGAGTGTT GCTAGGTACA ATGAATTTCG CAGAGGAATG CTGCAAATTC CCATCTCCAA ATGGGAAGAT TTGACGGACG ATGAAGAAGT GATTAATACA  CTTCGTGAAG TATATGGTGA TGATGTAGAA GAATTGGATC TGATGGTTGG AATGGCTGCC GAGAAAAAGA TTAAGGGTTT TGCCATTTCG GAGACTGCCT TTTTCATATT CCTCATCATG  GCATCAAGGA GGTTAGAGGC AGACAGATTT TTCACCAGCA ATTACAAGGA GGAGACATAT ACAAAGAAAG GACTGGAATG GGTAAATACA ACAGAAAGCT TGAAAGATGT GTTAGATCGA  CATTACCCTG AAATAACTGA GAAATGGATG AACTCCAGCA GCGCATTCTC TGTTTGGGAC TCTACTCCTG AACCTCACAA TCCTATTCCA CTCTACTTTC GCGTTCCTCC ACAGTAAATC  CATCATTCGA TTTATTAAAG GCAACCACAT ATATATATTG GAATTCTACA GCACTATATT CCTGCATATT TTATTAAATT TAAATATGAA AATAATGTGC TTGATTTAAT TTTACCTGTA  AGTTTGTAAT AAGATTTCTT GTTGGAATCT TCAATCTTTA CACAAATAGA TTATACATTA ATTATACATA ATTGTACACA TATAATACAT AAATTATGCA TATATTATAC ATTTTACTAA  TTATTTTTAC TTTAAACGAT TGGGTGGTCA GCCATTTGGG TTAATTCTTG TTTTATTTGG TGAGCCATCT AGTAAAACTG TTTCAATTTG TAATAAGACT GTCTTGGTTC GAACTTCGAA 
GTTAATGTTG ATCATCTATT GTTTCTTAAA AGAAGATTGC AATTCTTTTT ACGTTGTATT GAATTTTAAT AGTTTATGTA ATGAACGATA ATTTT 

Retrieve as FASTA