The peroxidases and oxidases database
Entry information : SbPrx01 (Sobic.001G045100.1[2.1] / Sb01g004160 [1.4])
Entry ID 827
Creation 2006-01-17 (Christophe Dunand)
Last sequence changes 2006-01-17 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2014-07-31 (Christophe Dunand)
Peroxidase information: SbPrx01 (Sobic.001G045100.1[2.1] / Sb01g004160 [1.4])
Name (synonym) SbPrx01 (Sobic.001G045100.1[2.1] / Sb01g004160 [1.4])
Class Class III peroxidase    [Orthogroup: Prx258]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Roots
Inducers Acid treatment
Alkaline treatment
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx01
start..stop		 S start..stop
SiPrx124 477 6e-171 30..339 24..327
EcamPrx176 324 8e-111 18..339 5..325
MePrx127 322 7e-110 18..339 4..324
AcoPrx32 320 3e-109 22..339 8..325
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3356399..3357418 1020  
join(3356399..3357418)


exon

Literature and cross-references SbPrx01 (Sobic.001G045100.1[2.1] / Sb01g004160 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_1 (3356399..3357418)
Cluster/Prediction ref. PlantGDB:   SbGSStuc11-12-04.10642.1
Protein sequence: SbPrx01 (Sobic.001G045100.1[2.1] / Sb01g004160 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   339 (300)
PWM (Da):   %s   36058.06 (32174.0) Transmb domain:   %s   i21-43o
PI (pH):   %s   6.83 (6.30) Peptide Signal:   %s   cut: 40 range:40-339
Sequence
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Send to Peroxiscan
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MHMAACTRTS TGSNKPPSLC LLLLVHALLL AIASSPAGGL QVGFYQQTCP QAESIVRNVT WARAAADPSL AGKLLRLYFH DCFPQGCDAS VLLDGRGTEK AAPPNQSLGG LDVVDAAKAA  LEAACPGTVS CADVVALATR DAVSFQFRRS LWQVETGRRD NRFSDEAHAT DLPSPEFVFP LLRDSFAKRG LGVRDLVALS GAHTLGHTDC QFVSPRLYTF QGNGGVDPFI DPSYARELMR 
QCPATPPPSS SSSSGKVALD PGSEFTFDTS YYATIKANRG ALHTDSVLLH DDEAARLVDE MHDQGKFLTA FAASIQKLGA FGVITGNKGE IRRNCHVVN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 1, no intron) and 2 ESTs.
DNA ►
Send to BLAST
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ATGCATATGG CTGCTTGTAC CCGCACCAGC ACCGGCAGCA ACAAGCCGCC GTCGCTGTGC CTGCTCCTCC TCGTCCACGC GCTGCTGCTC GCCATCGCGT CGTCTCCTGC CGGCGGTCTC  CAGGTGGGCT TCTACCAGCA GACCTGCCCC CAGGCGGAGT CCATCGTTCG GAACGTGACC TGGGCGCGGG CGGCCGCGGA CCCGAGCCTG GCCGGCAAGC TGCTGCGGCT CTACTTCCAC  GACTGCTTCC CGCAGGGCTG CGACGCGTCG GTGCTGCTGG ACGGCCGGGG CACGGAGAAG GCGGCGCCGC CGAACCAGTC GCTGGGCGGG CTGGACGTCG TCGACGCCGC CAAGGCGGCG  CTGGAGGCGG CCTGCCCGGG CACCGTCTCC TGCGCGGACG TCGTGGCGCT GGCCACCCGC GACGCCGTCT CCTTCCAGTT CCGCCGCTCG CTGTGGCAAG TCGAGACGGG CCGCCGCGAC  AACCGCTTCT CCGACGAGGC GCACGCCACG GACCTGCCCA GCCCGGAGTT CGTGTTCCCG CTCCTCAGGG ACTCCTTCGC CAAGCGGGGG CTCGGCGTCC GCGACCTCGT CGCGCTCTCC  GGCGCGCACA CGCTGGGACA CACGGACTGC CAGTTCGTGT CACCGAGGCT CTACACCTTC CAGGGCAACG GCGGGGTGGA CCCGTTCATC GACCCGAGCT ACGCGCGGGA GCTCATGCGC  CAGTGCCCCG CCACGCCGCC GCCGTCGTCG TCGTCGTCGT CCGGCAAGGT GGCCTTGGAC CCTGGCAGCG AGTTCACGTT CGACACCAGC TACTACGCCA CCATCAAGGC CAACCGCGGC  GCGCTGCACA CGGACTCCGT GCTGCTGCAC GACGACGAGG CCGCCCGCCT CGTCGACGAG ATGCACGACC AAGGCAAGTT CCTCACCGCC TTCGCCGCGT CCATCCAGAA GTTGGGAGCC 
TTCGGCGTCA TCACCGGCAA CAAAGGGGAG ATCAGGAGGA ACTGCCACGT CGTCAACTAA 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCATATGG CTGCTTGTAC CCGCACCAGC ACCGGCAGCA ACAAGCCGCC GTCGCTGTGC CTGCTCCTCC TCGTCCACGC GCTGCTGCTC GCCATCGCGT CGTCTCCTGC CGGCGGTCTC  CAGGTGGGCT TCTACCAGCA GACCTGCCCC CAGGCGGAGT CCATCGTTCG GAACGTGACC TGGGCGCGGG CGGCCGCGGA CCCGAGCCTG GCCGGCAAGC TGCTGCGGCT CTACTTCCAC  GACTGCTTCC CGCAGGGCTG CGACGCGTCG GTGCTGCTGG ACGGCCGGGG CACGGAGAAG GCGGCGCCGC CGAACCAGTC GCTGGGCGGG CTGGACGTCG TCGACGCCGC CAAGGCGGCG  CTGGAGGCGG CCTGCCCGGG CACCGTCTCC TGCGCGGACG TCGTGGCGCT GGCCACCCGC GACGCCGTCT CCTTCCAGTT CCGCCGCTCG CTGTGGCAAG TCGAGACGGG CCGCCGCGAC  AACCGCTTCT CCGACGAGGC GCACGCCACG GACCTGCCCA GCCCGGAGTT CGTGTTCCCG CTCCTCAGGG ACTCCTTCGC CAAGCGGGGG CTCGGCGTCC GCGACCTCGT CGCGCTCTCC  GGCGCGCACA CGCTGGGACA CACGGACTGC CAGTTCGTGT CACCGAGGCT CTACACCTTC CAGGGCAACG GCGGGGTGGA CCCGTTCATC GACCCGAGCT ACGCGCGGGA GCTCATGCGC  CAGTGCCCCG CCACGCCGCC GCCGTCGTCG TCGTCGTCGT CCGGCAAGGT GGCCTTGGAC CCTGGCAGCG AGTTCACGTT CGACACCAGC TACTACGCCA CCATCAAGGC CAACCGCGGC  GCGCTGCACA CGGACTCCGT GCTGCTGCAC GACGACGAGG CCGCCCGCCT CGTCGACGAG ATGCACGACC AAGGCAAGTT CCTCACCGCC TTCGCCGCGT CCATCCAGAA GTTGGGAGCC 
TTCGGCGTCA TCACCGGCAA CAAAGGGGAG ATCAGGAGGA ACTGCCACGT CGTCAACTAA 

Retrieve as FASTA