Entry information : BnAPx-R-2_other
Entry ID 8309
Creation 2011-04-18 (Christophe Dunand)
Last sequence changes 2011-04-18 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2011-05-02 (Christophe Dunand)
Peroxidase information: BnAPx-R-2_other
Name BnAPx-R-2_other
Class Ascorbate peroxidase related     [Orthogroup: APx-R001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Brassica
Organism Brassica napus (oilseed rape)    [TaxId: 3708 ]
Cellular localisation N/D
Tissue type Ovaries
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value BnAPx-R-2_other
start..stop
S start..stop
BrAPx-R-1Aa_other 427 2e-153 2..208 60..266
BnAPx-R-1_other 415 9e-149 1..208 57..264
BoAPx-R-1Ca_other 414 2e-148 1..208 57..264
AlyAPx-R 369 9e-131 1..208 62..269
Literature and cross-references BnAPx-R-2_other
Literature Malik,M., Whittle,C.A., Zhou,N. and Krochko,J.E. Brassica napus ovules prior to fertilization. Unpublished (2009)
EST ref. GenBank:   GR449594.1 [Fragment]
Protein sequence: BnAPx-R-2_other
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   208 (175)
PWM (Da):   %s   22513.71 (18859.7)  
PI (pH):   %s   7.57 (5.33) Peptide Signal:   %s   cut: 34 range:34-208
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GSRHVFVSSR RQMAVLLSTV QLLSHWLPPD GKAADMYPLM KDEIRRVVTK GKAAGVLRLV FHDAGTFELD DNTGGINGSI VYELERPENA GLKRSLKVLE KAKIKVDEIQ PVSWADMIAV 
GGSEAVSMCG GPTIPVVLGR LDSMQPDPED KLPPESLNAS GLKECFQRKG FSTQELVALS GAHTIGSKGF GDPFTFDNAY YKILLKKP 

Retrieve as FASTA  
Remarks Partial sequence from 1 EST. 5' and 3' ends are missing. No GSS. Cultivar="Topas (embryogenic line DH4079)".
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TGTTTCTGCA TGTTTTGACT AGGTTCACGT CATGTATTCG TGTCCAGTAG AAGACAAATG GCTGTCTTGT TATCCACTGT ACAGCTTCTG TCTCATTGGC TTCCCCCTGA TGGAAAGGCA  GCTGACATGT ATCCACTGAT GAAAGACGAG ATAAGGAGAG TGGTGACGAA GGGTAAAGCT GCTGGTGTGC TTCGTTTAGT GTTTCATGAT GCTGGAACCT TTGAACTTGA TGATAACACA  GGTGGCATCA ATGGGTCTAT TGTTTATGAA CTGGAAAGAC CTGAAAACGC AGGTTTGAAG AGATCTCTAA AGGTTCTAGA GAAAGCAAAG ATTAAGGTTG ATGAGATACA ACCAGTGTCT  TGGGCCGATA TGATCGCTGT TGGTGGCTCT GAAGCAGTCT CAATGTGCGG CGGCCCAACA ATTCCAGTAG TTTTAGGAAG ACTTGATTCA ATGCAACCTG ATCCAGAAGA CAAGTTACCT  CCAGAATCCC TCAATGCCTC GGGTTTAAAA GAATGTTTCC AAAGAAAAGG ATTCTCGACC CAAGAACTTG TTGCCTTATC TGGTGCACAT ACGATTGGGA GTAAAGGCTT TGGAGATCCA 
TTTACCTTTG ACAATGCATA CTACAAAATC CTTCTTAAAA AACCT 

Retrieve as FASTA