Entry information : VcaCP01
Entry ID 8373
Creation 2011-05-12 (Christophe Dunand)
Last sequence changes 2011-05-12 (Christophe Dunand)
Sequence status complete
Reviewer Marcel Zamocky
Last annotation changes 2012-01-18 (Christophe Dunand)
Peroxidase information: VcaCP01
Name VcaCP01
Class Catalase peroxidase    [Orthogroup: CP002]
Taxonomy Eukaryota Viridiplantae Chlorophyta Chlorophyceae Volvocaceae Volvox
Organism Volvox carteri    [TaxId: 3067 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value VcaCP01
start..stop
S start..stop
CreCP01 801 0 25..708 21..729
PulCP01 743 0 25..701 25..686
PsojCP 741 0 7..701 5..683
PiCP01 736 0 7..700 8..685
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 623660..623805 146 N° 2 624287..624496 210 N° 3 624684..624954 271 N° 4 625278..625391 114
N° 5 625814..625877 64 N° 6 626112..626281 170 N° 7 626556..627109 554 N° 8 627463..627654 192
N° 9 627905..628064 160 N° 10 628383..628523 141 N° 11 628759..628869 111  
join(623660..623805,624287..624496,624684..624954,625278..625391,625814..625877, 626112..626281,626556..627109,627463..627654,627905..628064,628383..628523,62875 9..628869)


exon

Literature and cross-references VcaCP01
Literature Prochnik S., Umen J., Nedelcu A.M., Hallmann A., Miller S.M., Nishii I., Ferris P., Kuo Al. Mitros T. et al. (2010) Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri. Science 329:223-226.
Protein ref. UniProtKB:   D8UCP0 [Incorrect prediction]
DNA ref. Phytozome 12:   scaffold_60 (623660..628869)
Cluster/Prediction ref. UniGene:   Vca.1617 [5' end]   Vca.1438 [3' end]
Protein sequence: VcaCP01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   711 (691)
PWM (Da):   %s   77173.99 (75116.9)  
PI (pH):   %s   5.33 (5.22) Peptide Signal:   %s   cut: 20 range:20-710
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAAPRFLCAVLISILATQAIQVAAKCPFHFGRARMDDDVGAILQAEPRRMLTSADVKAVNELNLDAVKADLKALFLDSKDWWPADFGNYGPLMIRMAWHCAGSYRTSDGRGGCDGARQRFDPERSWADNTSLDKARKLLWPIKEKYGSALSWGDLMILAGNTAIESMGGPILGFCAGRIDDADGSASEPLGPSLDQEMVAPCSVNGECEAPLGASTMELIYVNPEGPLGNPVPELSAPQIRDIFGRMAMNDSETVALVGGGHAFGKCHGACPTGPGPSPRQQPWDPWPGTCGNGTMKGKGENTFTSGFDGPWTTQPTKWDNEYYQNLLKYDWEVYMGPGGHHQWRPVKKDPSDPEELPDIIMLTADVALTRDPAYLEIVKLYASDLGALERAFSHAWYKLTTRDMGPYTRCLGSQVPPPQPFQAPLPPPPATLPDFKAVSKAIAKALRTASPALEGDLVGGKPYYGALFANLAYQCACSFRQTDYTGGCNGARIRFSPQKDWPNNVAMDRVLAVLEPIKASFPTLTYSDLIVLAGSNALTDAKAKGIRFCPGRSDADPNEPPAPVYPPRTMNNKIAQLMDNGIVMGLDMREMVAIQARLRSPSQQRRLGFSGSWTNDASKLTNEYFRVLLDNDWVNVTSSAGQLEMKAVGKEGIYMTPTDLAIKWDAVLSAIAQEFATDATAFYTAFASAWNKMMIADRFKGPTANECPS*

Retrieve as FASTA  
Remarks Complete sequence from genomic (10 introns) and 24 ESTs. Incorrect splicing prediction from Phytozome => confirmed with EST (FD830641.1).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCACCAAGATTTCTTTGCGCTGTATTGATCTCAATACTAGCGACGCAAGCAATCCAGGTGGCTGCGAAGTGTCCCTTTCACTTCGGCCGGGCCCGTATGGACGACGATGTCGGT
GCTATCCTCCAGGCGGAACCGCGCAG
GCAGGTGCTTGCTAACCTGTTGGCTTTCTGTTCTACTGTAAATGTCCATTGGATGCCTCATTCGGAGGCTCAAGGCCCTGTACTGCGTTTGCAG
CAATGCCGAGCGTAGCGGCTTTTATAGCGAGCACCAAGATCACCATACCCAACAGATATTAAACGAGATTTGTTGTTTTTTGAGCTTAGGAGAGCAGTTCGAATGCTACCGAGGCTCGGT
TTCAGTTTCCCATAGGAGTTGGCGCCGTCCCAGATATCCGATCCACATGAACCTGAACTGAATCAATGGAGAATTTCACTTCCATCTGTCAATTATCCCGCGATTTCATTTGTATTGTTA
CTTATTCCGCGACATATGCTTTCGCAATCGTAACCTGCCGACATTCACGTGTTCTGTCGCAATAAATTGACCCCTTCTTTTCACGTAGGCTCCAATACTGGCATCTTCCTAATCTTATAA
TGAATCCATTCTGCCCTTTCCTCCCAGGATGCTGACATCTGCTGATGTCAAAGCTGTGAATGAGCTCAACCTTGACGCTGTCAAGGCAGACCTGAAAGCTCTCTTTCTTGATTCGAAGGA
CTGGTGGCCAGCAGATTTTGGAAACTACGGACCTCTCATGATCCGCATGGCTTGGCACTGCGCCGGCTCGTATCGCACGTCGGATGGCCGTGGCGGCTGTGATGGTGCTCGGCAAAG
GTA
TGCGGAGACCTCCAGCCCTTGAATGCATGCACTTTAAGTGCGAAGTCATGAAATATATATTCTATGAGATTGTTATTATAACAGAAACATTTCTAGCCATAAACTGTATTGAAGTTCGAC
TCGACCATCGACTTTACAAGCCCATATCGACAGTTATCGGAATGTTTCTTTTCCACATCTACAGGTTCGATCCCGAGCGTTCCTGGGCCGACAACACGAGTCTGGACAAGGCCCGCAAGC
TGCTATGGCCCATCAAGGAGAAGTACGGCAGTGCGCTTTCCTGGGGTGACCTCATGATCCTCGCGGGTAACACGGCCATTGAGTCTATGGGCGGCCCCATCCTGGGCTTCTGCGCGGGCC
GCATCGACGACGCGGACGGCAGCGCCTCCGAACCCCTGGGCCCCTCCCTGGATCAGGAAATGGTCGCTCCCTGCTCCGTAAATGGGGAGTGCGAG
GTGAGTGCCACATCGACATGGACCC
CACCAATTTCCCTGTCCATTTGTAACGTTGCAAACCGGACGAAGGTACTCGTGCCGTAACGATACTTCAGCTTCCGACCTCCCATTAGGGGGGTCAGTCCTCTGCTCTGCTCGCCACCTA
GGCAGAAGTAACACCAAAAAGAAGACTGTGCACCTCATGTAATAAATGGTATATAATAAACCATCAAATAAATAAACTGCTTGTTTACGACAGTTTCTTATCCCAGCAAGATAAGACCTT
GTTGTGGCGTTCGGGCTTCAGTTTAGTTGCCTCCTTCCGTACTCCTCTCTCTCGCCAGGCGCCCCTCGGCGCCTCCACCATGGAGCTCATCTACGTCAACCCCGAGGGCCCCCTGGGCAA
CCCGGTTCCGGAGCTGAGTGCGCCCCAAATTCGGGATATCTTCGGTCGCATG
GTGGGTCGTACGGATCATCACGTGCTAGTAGTAAGTCCGTAGCGGGAAGTAAAAAAGCTGATCGTTTT
GCTGCGGTCGCTGAGGTACGGTGCTCTGGTTGTGGCAGATGACGCCATATCTGCATGTCAATGTGAATATCCCAACTGGCCATGCATGCTTCCTCTTACTGCATGACGTTTTGAAATCTG
GCGCTGACAGCTTTGGATACGTATTGTGGTGTAGATCGCAGCATCTACATAGCTGAGCTAAAAATTGGAAAATATTGCCGCAGTCCGCTGTGTTTACATGATGCTGCTGGATTTCTTGTA
CGCTTTCTTGGCGCCAACCACTCCCCGCAATGAACGACACCACAACGATACCCAACCCACATCACTCCGTACCTTGCCCTGCCGTACCGTACCGTGCCGTATCGTTCGGCACAGGCTATG
AACGACTCTGAGACGGTGGCGCTGGTTGGCGGCGGACACGCCTTCGGCAAGTGCCACG
GTGCGTCTTGTTGGAGGGGGGGGTGGGTGGGGCTCGCAACGTGAGCTGCGTGTACCTCTCGT
CATGTACCTCGTCCCTGGTAACCTTGCTAGCCTCGGTCTGCTTGCTGTCCCCCAAACGACCTCACCAACTGCCTGTCCTTCCTAGTTTTAATTATTTGGCTTCATATGAATGATCGATCG
ATCGATCAAGGCCAATTGTGACCTGAGCTCCCGTCCCGTTCCGTACCTTCAGGCGCCTGCCCGACTGGCCCCGGCCCCAGCCCCCGACAGCAGCCTTGGGACCCGTGGCCCGGCACCTGC
GGCAACGGCACTATGAAGGGCAAGGGCGAGAACACCTTCACCAGCGGCTTCGACGGCCCCTGGACCACCCAGCCTACCAAGTGGGACAACGAATACTACCAG
GTGGGCCGGAAAGTGGTG
GCGTTGAAAGACCATGAGGAGATGCATCTGGAGATCACATCTAGGGTGGTTTGGGCAGTTGGCGGCATGTATGGATGCATGCGGGCAGGCAGTGGGGGCGGAAGGCTCCGATCAAACGTT
TCTCAAATTAGAATACAATGCCATGCCGACCATCCATCACTGCGTGTGTGTGTGTGTGTTTGCGTGTTTGTGTGTGTGTGTGTGTTTGCGTGTTTGTGTGTGTGTGTGTGTGTTTTTATG
GCATCCGTATTCACAGAACCTGCTCAAGTATGACTGGGAGGTGTACATGGGCCCCGGAGGCCACCACCAGTGGCGCCCCGTCAAGAAGGACCCCTCTGACCCGGAGGAGCTGCCGGACAT
CATCATGCTCACGGCGGACGTCGCCCTCACCCGGGACCCGGCCTACCTCGAGATCGTCAAGCTCTACGCCTCCGACTTGGGCGCCCTGGAGCGCGCATTCAGCCATGCGTGGTACAAGCT
CACGACCCGCGATATGGGCCCATACACGCGCTGCCTGGGCAGTCAGGTGCCTCCGCCGCAGCCCTTCCAGGCGCCCCTGCCGCCGCCGCCAGCAACACTGCCCGACTTCAAGGCCGTGTC
CAAGGCCATTGCCAAGGCCCTGCGTACTGCCAGCCCGGCGCTGGAAGGCGACTTGGTGGGCGGCAAGCCGTACTACGGCGCGCTGTTCGCCAACCTGGCGTATCAGTGTGCGTGCAGCTT
CCGCCAGACGGATTACACTGGCGGCTGCAACGGTGCGCGCATCCGGTTCTCTCCGCAGAAGGACTGGCCCAACAACGTGGCCATGGACAG
GTGCGTGCGTGAGAGGAGGAGGAGGAGGCG
CCTCACTGCACCTGCGAGATGGATGGGCGGGACAGGGGGCGCGTGAGACGGAATTGCACGTTGTGCTACGACCTGATGAGCGTCCTGACTTGTGACAGTGATAGGTTTGGAGCCTTTTAT
AAAAAAAGGTGAACGGGCCCCGTAGTCGCATGTGGCCATGTGTGGGTGTATGTGGGGGGTGTTGGGTGGCCTTTGGCATCTCGAGGGGCCTTATAAACCGGCGCGCCGTATTACTAGAAC
CTGCCCAAGCCCAAGCCCAAGCGGAGTCAACAACCAACTAATAACCGAAATGGACCAACGAACCGACATTTGTGTGCTCGCAGGGTGTTGGCAGTTTTGGAGCCGATCAAGGCCAGCTTC
CCCACTCTGACGTACTCGGACCTCATCGTGCTGGCCGGCAGTAACGCCCTCACGGATGCGAAGGCCAAGGGCATCCGGTTCTGCCCGGGCCGCTCCGATGCCGACCCCAACGAGCCGCCC
GCACCCGTCTATCCGCCACGTACCATGAATAACAA
GTGAGGAGGCGGGCATGGCGGGAAATTTGGGGAATATATGGCCGTCTGTGTGTATGTGTGTGTGTGTGTGCGTGTGTGTGTGCGT
GTGTGGCTTAAGGGTTAGGGGCGTGCGATCAGGGGCTGGGGCTTTTGCCAGGTTTGAAGGCAGGAATGTGGGGGTTTTGGTGACACGTGGTCATTTCAGCTGGGCACTTCACTCACCCGC
CCGCCGATCCGACGACCCGCAATCATACACCGCCAATGTGTGCAGGATTGCGCAGTTGATGGACAACGGCATTGTGATGGGTCTTGATATGCGTGAGATGGTGGCCATCCAGGCCCGACT
GCGCAGCCCCTCTCAGCAGCGCCGCCTGGGCTTCAGCGGCAGCTGGACCAACGACGCCTCCAAGCTCACCAACGAGTACTTCCGG
GTGGGTGGGAGGTGCGCGCGGGTCTGTCCGCGTTC
CCGTAGGCGCCGCAATGCACTGCGAACACTTAGCACTTTCTACGTGTGCTACATTTAATATTTATAATCCGTACGAATGGCTGAATTTATTCACCTAGAATTCGTTGTGAGTGGGATACG
GGAAGGAGGTACACGTACAATAATACTTGGTTTGCGGCCATTGATTTTATTTATTGCTTTTGCTGCTTCTGCTGCTGCTCCAGCCACCTGCCACCTGCCGCTCGTCTACACCCTCGTCTG
CTCTCCCACCGCCTCCTTCGCGCTCTCCGCCCGCCCTGTGCAGGTGCTGCTGGATAACGACTGGGTGAACGTGACCTCGTCTGCCGGTCAACTGGAGATGAAGGCTGTCGGCAAGGAGGG
CATCTACATGACACCAACCGACCTGGCAATCAAGTGGGATGCCGTACTGTCCGCCATCGCGCAG
GTAAACCATCGATGACTCCAGGGCCGTGGGCAGCACAACGTTGTGAGGGGGTTGCG
CTGACGGCGAATATGCGGGAAGGAATGCCTTGAGAAAACGTTGTTGTACGGTTTGTGATAGCGAGCGCGACGCGCTGATGCATGGTCTGACCGGAAAGGATGATCGCGATTGTTCCGCAA
CTAGCTTAACTATAATTAGTTTAATTATTAACGGTAATATTCTGTCAAATCCCGCGCAGGAGTTCGCGACTGATGCCACGGCCTTCTACACTGCCTTTGCATCCGCCTGGAACAAGATGA
TGATTGCCGATCGGTTTAAGGGTCCCACCGCCAACGAGTGTCCGTCTTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCACCAAGATTTCTTTGCGCTGTATTGATCTCAATACTAGCGACGCAAGCAATCCAGGTGGCTGCGAAGTGTCCCTTTCACTTCGGCCGGGCCCGTATGGACGACGATGTCGGT
GCTATCCTCCAGGCGGAACCGCGCAG
GATGCTGACATCTGCTGATGTCAAAGCTGTGAATGAGCTCAACCTTGACGCTGTCAAGGCAGACCTGAAAGCTCTCTTTCTTGATTCGAAGGAC
TGGTGGCCAGCAGATTTTGGAAACTACGGACCTCTCATGATCCGCATGGCTTGGCACTGCGCCGGCTCGTATCGCACGTCGGATGGCCGTGGCGGCTGTGATGGTGCTCGGCAAAG
GTTC
GATCCCGAGCGTTCCTGGGCCGACAACACGAGTCTGGACAAGGCCCGCAAGCTGCTATGGCCCATCAAGGAGAAGTACGGCAGTGCGCTTTCCTGGGGTGACCTCATGATCCTCGCGGGT
AACACGGCCATTGAGTCTATGGGCGGCCCCATCCTGGGCTTCTGCGCGGGCCGCATCGACGACGCGGACGGCAGCGCCTCCGAACCCCTGGGCCCCTCCCTGGATCAGGAAATGGTCGCT
CCCTGCTCCGTAAATGGGGAGTGCGAG
GCGCCCCTCGGCGCCTCCACCATGGAGCTCATCTACGTCAACCCCGAGGGCCCCCTGGGCAACCCGGTTCCGGAGCTGAGTGCGCCCCAAATT
CGGGATATCTTCGGTCGCATG
GCTATGAACGACTCTGAGACGGTGGCGCTGGTTGGCGGCGGACACGCCTTCGGCAAGTGCCACGGCGCCTGCCCGACTGGCCCCGGCCCCAGCCCCCGA
CAGCAGCCTTGGGACCCGTGGCCCGGCACCTGCGGCAACGGCACTATGAAGGGCAAGGGCGAGAACACCTTCACCAGCGGCTTCGACGGCCCCTGGACCACCCAGCCTACCAAGTGGGAC
AACGAATACTACCAG
AACCTGCTCAAGTATGACTGGGAGGTGTACATGGGCCCCGGAGGCCACCACCAGTGGCGCCCCGTCAAGAAGGACCCCTCTGACCCGGAGGAGCTGCCGGACATC
ATCATGCTCACGGCGGACGTCGCCCTCACCCGGGACCCGGCCTACCTCGAGATCGTCAAGCTCTACGCCTCCGACTTGGGCGCCCTGGAGCGCGCATTCAGCCATGCGTGGTACAAGCTC
ACGACCCGCGATATGGGCCCATACACGCGCTGCCTGGGCAGTCAGGTGCCTCCGCCGCAGCCCTTCCAGGCGCCCCTGCCGCCGCCGCCAGCAACACTGCCCGACTTCAAGGCCGTGTCC
AAGGCCATTGCCAAGGCCCTGCGTACTGCCAGCCCGGCGCTGGAAGGCGACTTGGTGGGCGGCAAGCCGTACTACGGCGCGCTGTTCGCCAACCTGGCGTATCAGTGTGCGTGCAGCTTC
CGCCAGACGGATTACACTGGCGGCTGCAACGGTGCGCGCATCCGGTTCTCTCCGCAGAAGGACTGGCCCAACAACGTGGCCATGGACAG
GGTGTTGGCAGTTTTGGAGCCGATCAAGGCC
AGCTTCCCCACTCTGACGTACTCGGACCTCATCGTGCTGGCCGGCAGTAACGCCCTCACGGATGCGAAGGCCAAGGGCATCCGGTTCTGCCCGGGCCGCTCCGATGCCGACCCCAACGAG
CCGCCCGCACCCGTCTATCCGCCACGTACCATGAATAACAA
GATTGCGCAGTTGATGGACAACGGCATTGTGATGGGTCTTGATATGCGTGAGATGGTGGCCATCCAGGCCCGACTGCGC
AGCCCCTCTCAGCAGCGCCGCCTGGGCTTCAGCGGCAGCTGGACCAACGACGCCTCCAAGCTCACCAACGAGTACTTCCGG
GTGCTGCTGGATAACGACTGGGTGAACGTGACCTCGTCT
GCCGGTCAACTGGAGATGAAGGCTGTCGGCAAGGAGGGCATCTACATGACACCAACCGACCTGGCAATCAAGTGGGATGCCGTACTGTCCGCCATCGCGCAG
GAGTTCGCGACTGATGCC
ACGGCCTTCTACACTGCCTTTGCATCCGCCTGGAACAAGATGATGATTGCCGATCGGTTTAAGGGTCCCACCGCCAACGAGTGTCCGTCTTGA

Retrieve as FASTA