Entry information : WcoCIIBA
Entry ID 8494
Creation 2011-09-14 (Christophe Dunand)
Last sequence changes 2011-09-14 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-06-29 (Christophe Dunand)
Peroxidase information: WcoCIIBA
Name WcoCIIBA
Class Other class II peroxidase type A    [Orthogroup: CIIBA001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Coriolaceae Wolfiporia
Organism Wolfiporia cocos    [TaxId: 81056 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value WcoCIIBA
start..stop
S start..stop
LsulCIIBA01 451 9e-161 22..330 36..344
PplCIIBA 407 1e-143 23..323 8..306
FpinCIIBA 405 1e-142 24..300 42..318
CsuCIIBA 393 1e-137 6..330 19..342
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1758239..1758281 43 N° 2 1758334..1758362 29 N° 3 1758424..1758441 18 N° 4 1758496..1758521 26
N° 5 1758581..1758685 105 N° 6 1758742..1758755 14 N° 7 1758810..1758851 42 N° 8 1758911..1758989 79
N° 9 1759040..1759334 295 N° 10 1759392..1759536 145 N° 11 1759592..1759758 167 N° 12 1759812..1759838 27
join(1758239..1758281,1758334..1758362,1758424..1758441,1758496..1758521,1758581 ..1758685,1758742..1758755,1758810..1758851,1758911..1758989,1759040..1759334,17 59392..1759536,1759592..1759758,1759812..1759838)


exon

Literature and cross-references WcoCIIBA
DNA ref. JGI genome:   scaffold_3 (1758239..1759838)
Protein sequence: WcoCIIBA
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   330 (313)
PWM (Da):   %s   35365.52 (33558.5)  
PI (pH):   %s   5.81 (5.56) Peptide Signal:   %s   cut: 18 range:18-330
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MRACYLVLSLLAVFVAGMTQKAPCGRWYTILDEIQANLFNEGRCGNQAREAIRLTFHDGIGRSAALQASGRFGGGGDGSIIKFAHTELANPANDGLEDVVYALKHFADNHNVSYGDIIQFAGAVALSNCPGSPRLAFHFGRPQAIAPSPPNLVPSPSDSAEQLLARMEDAGFTADDTVALLAAHSLAVQRTIDPSIPGTPLDSTPGEFDAQFYLMLLKGTAYPGKGHSSAEAKSPMKHEFRLASDAAVARHSSTACKWQSFIGDQRGLQASFRDAMLKLANQGFDDLVDCSDVIPIPRRSNRLLQYPTGKNYSDIEQCPDVPFPGL

Retrieve as FASTA  
Remarks Complete sequence from genomic (11 introns). No EST. 5'end looks different without concerved residues. alternative prediction MRQGGVAAQAICQSAGRLHRLASRKLMCDEGLLSCIEPPCCI which need to be confirmed.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGGGCTTGTTATCTTGTATTGAGCCTCCTTGCTGTATTCGGTATGTTTCATGAGCGCTATTCATGATGATATAGCTATGCTGAACGCCTCAGTTGCTGGCATGACCCAGAAAGCGCC
CGAG
GCAGGTCATTGACCACCTGTAGCGGATTCAATTGTTCCAGAACCTGCTAACCTTCCTATAGTGTGGCAGGTGGTATACTGTAAGCATATTTCTAACCTATCTGTGATGAATCTGCA
ATCCCATCTGCAATCAGATCCTTGATGAGATACAAGCAAATTTGTAGGTTCATTGGACCGTACATGTGTCTGATGCCCTCATCGCTCCCCGTCGTGCAACAGGTTCAACGAAGGACGTTG
TGGAAACCAAGCTCGAGAAGCCATCCGCTTGACATTCCATGATGGGATCGGTCGCTCGGCGGCGTTGCAGGCTTCAGGAAGATTTGG
GTGAGTATGCTAGTGTCGGTTGAATCTTGGTGG
CTGATGAGCAATTCATTGAAAAGAGGAGGGGGCGCAGGTAAAGCTTCAATAGTTGCCTAATTATAATACAATAAATCATCGTGCTGTTCAGATGGCAGCATCATCAAATTTGCCCACACG
GAGTTGGCCAACC
GTTAGGTCCCTTCTCTGCACGGTTGCACTCTGATTGTAATTATGCTGATTACCCGATAGCGGCAAATGACGGCCTGGAGGATGTAGTATACGCTCTCAAGCACTTTG
CCGATAACCACAACGTCAGCTACGGTGACAT
GTGCGTCCCACTGGCGTGTCTATAATGCGTAGATGCTGATGTTGTCGCAGAATTCAATTCGCCGGAGCAGTCGCCCTCTCAAATTGTCC
TGGAAGTCCTCGTCTTGCATTCCATTTCGGGCGTCCTCAGGCAATCGCCCCATCTCCTCCGAACCTTGTTCCCTCTCCTTCGGACTCCGCTGAGCAGCTCCTCGCACGCATGGAAGACGC
AGGCTTCACGGCGGACGATACTGTCGCGCTTCTGGCCGCTCATTCACTTGCGGTGCAAAGAACAATCGATCCAAGCATCCCTGGCACCCCCCTCGATTCTACTCCGGGAGAGTTTGACGC
GCAGTTCTATTTGGAG
GTGTGATGCACAGCCAGAGTGACCACTGGTTTACCTTTAGCTGAGTTGCGTCTGCAGATGCTGCTGAAAGGCACCGCCTATCCTGGGAAAGGGCATAGCTCAGC
GGAGGCGAAGTCCCCAATGAAGCACGAGTTCCGGCTTGCCTCGGATGCTGCAGTGGCCCGTCATAGCAGTACTGCGTGCAAGTGGCAGTCCTTCATTG
GTAAGTCCGAAGTGCTCCCGGC
AAGAAGAACATACTCATGACTTTATCTGAGCAGGCGATCAAAGAGGCCTGCAAGCATCATTCCGTGACGCTATGCTGAAGCTCGCTAATCAGGGCTTCGACGACCTCGTCGATTGCTCAG
ATGTCATCCCCATCCCAAGGCGCTCAAACCGTCTCTTACAGTATCCGACAGGCAAGAACTACTCCGATATTGAACAGTTT
GTAAGTTGGCAGCAAAAGGATGTCATGCAAAGTCGTACTT
ACGAGATGAACAGTGTCCTGATGTCCCCTTTCCTGGGCTA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGGGCTTGTTATCTTGTATTGAGCCTCCTTGCTGTATTCGTTGCTGGCATGACCCAGAAAGCGCCCGAGTGTGGCAGGTGGTATACTATCCTTGATGAGATACAAGCAAATTTGTTC
AACGAAGGACGTTGTGGAAACCAAGCTCGAGAAGCCATCCGCTTGACATTCCATGATGGGATCGGTCGCTCGGCGGCGTTGCAGGCTTCAGGAAGATTTGG
AGGAGGGGGCGCAGATGGC
AGCATCATCAAATTTGCCCACACGGAGTTGGCCAACC
CGGCAAATGACGGCCTGGAGGATGTAGTATACGCTCTCAAGCACTTTGCCGATAACCACAACGTCAGCTACGGTGACATAATT
CAATTCGCCGGAGCAGTCGCCCTCTCAAATTGTCCTGGAAGTCCTCGTCTTGCATTCCATTTCGGGCGTCCTCAGGCAATCGCCCCATCTCCTCCGAACCTTGTTCCCTCTCCTTCGGAC
TCCGCTGAGCAGCTCCTCGCACGCATGGAAGACGCAGGCTTCACGGCGGACGATACTGTCGCGCTTCTGGCCGCTCATTCACTTGCGGTGCAAAGAACAATCGATCCAAGCATCCCTGGC
ACCCCCCTCGATTCTACTCCGGGAGAGTTTGACGCGCAGTTCTATTTGGAG
ATGCTGCTGAAAGGCACCGCCTATCCTGGGAAAGGGCATAGCTCAGCGGAGGCGAAGTCCCCAATGAAG
CACGAGTTCCGGCTTGCCTCGGATGCTGCAGTGGCCCGTCATAGCAGTACTGCGTGCAAGTGGCAGTCCTTCATTG
GCGATCAAAGAGGCCTGCAAGCATCATTCCGTGACGCTATGCTG
AAGCTCGCTAATCAGGGCTTCGACGACCTCGTCGATTGCTCAGATGTCATCCCCATCCCAAGGCGCTCAAACCGTCTCTTACAGTATCCGACAGGCAAGAACTACTCCGATATTGAACAG
TTT
TGTCCTGATGTCCCCTTTCCTGGGCTA

Retrieve as FASTA