Entry information : ShirCIIBA01
Entry ID 8504
Creation 2011-09-20 (Christophe Dunand)
Last sequence changes 2011-09-20 (Christophe Dunand)
Sequence status complete
Reviewer Nizar Fawal
Last annotation changes 2012-10-30 (Nizar Fawal)
Peroxidase information: ShirCIIBA01
Name ShirCIIBA01
Class Other class II peroxidase type A    [Orthogroup: CIIBA001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Stereaceae Stereum
Organism Stereum hirsutum    [TaxId: 40492 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value ShirCIIBA01
start..stop
S start..stop
HanCIIBB04 328 2e-111 14..361 6..353
PstrCIIBB02 327 3e-111 32..361 23..355
PoVP04_PC15 326 1e-110 7..363 9..355
PoVP04_PC9 323 1e-109 7..349 9..341
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 220637..220712 76 N° 2 220807..221146 340 N° 3 221209..221330 122 N° 4 221389..221464 76
N° 5 221517..221630 114 N° 6 221687..221766 80 N° 7 221852..222063 212 N° 8 222128..222211 84
join(220637..220712,220807..221146,221209..221330,221389..221464,221517..221630, 221687..221766,221852..222063,222128..222211)


exon

Literature and cross-references ShirCIIBA01
DNA ref. JGI genome:   scaffold_14 (220637..222211)
Cluster/Prediction ref. JGI gene:   6856
Protein sequence: ShirCIIBA01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   367 (341)
PWM (Da):   %s   39075.25 (36361.6)  
PI (pH):   %s   4.6 (4.45) Peptide Signal:   %s   cut: 27 range:27-367
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MLSLLVLLLRVGGVLLLSAQLQVARGISIGSSRREACPDGIHSTNNAVCCPLFALRDTLQTSVFENTCGANSRLALRLTFHDALGYSTTRNMGGGSDGSIIQYAEIETAYPANAGLNGIIGQYLDFYKNNQVPLSYGDFIQFAGAVAMTNCPGSPTLQFFMGRPDAKGPALNGAISNADSSDVILARFADAGFNSDEVVTLLASHSVAKQSSLSSAPLDSTPALFDTQYYAETMLKGTVWPGAPNITGEVMSPTRSQVRLASDVFIADPRTACKWQGYVNDQQRMQSDFQAAMLKMSLLGQDQSALTDCSDVIENAPPLPQPATYFPDNFTVADVNQCSSTPFPNLPSAPGERDGFSPRLGRRD*

Retrieve as FASTA  
Remarks Complete sequence from genomic (7 introns).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTTTCATTGTTGGTCCTGCTTCTTCGCGTCGGCGGTGTCTTACTTCTATCGGCCCAGCTGCAGGTCGCCCGCGGTGCGTCTAGTTCTCTCCGACTGTCTGTCCAAACTTCCCTAGTT
TCAACAACCACTCATTAGTTGGGAATGACAACTTCTGTACCATGGTACAGGTATTTCGATCGGCTCAAGCCGTAGAGAAGCCTGTCCAGACGGAATTCACTCGACCAACAACGCCGTCTG
CTGTCCTCTCTTTGCCCTCCGGGACACACTTCAGACCAGCGTGTTCGAAAATACATGTGGCGCCAACTCCCGCCTAGCACTTCGTCTCACGTTTCACGATGCACTGGGGTATTCAACGAC
GCGTAACATGGGAGGCGGATCCGATGGTTCTATCATTCAATACGCGGAGATCGAGACAGCATACCCGGCGAATGCGGGGTTGAATGGCATTATTGGACAGTACTTGGACTTTTACAAGAA
TAATCAGGTCCCGCTCAGCTATGGAGATTT
GTGAGTGGGTGTCTTAGCGATGTGCAGTCTCTATCTGTTCTCATACGACTTGTGCGAACTAGTATTCAGTTCGCGGGTGCCGTAGCTATG
ACCAACTGTCCAGGATCTCCAACGTTACAATTCTTCATGGGTCGCCCCGACGCTAAAGGACCTGCATTGAATGGAGCAATATCTAATGCACCTG
GTTATCATTCCGCACCCAGTCCCTTC
GTCCGAATTACTCATGGACTACTTGGTTACAGACTCCTCGGATGTGATACTTGCCCGCTTCGCAGATGCAGGCTTCAACAGCGACGAAGTCGTGACTCTGTTGGCGTCGTAAGTTTTTTC
ACTTGTTTTGCTGTGGCCGTTGACGAACCGATACTCTCAGACACTCTGTTGCCAAACAGTCTTCCCTTTCTAGTGCTCCTCTCGATAGCACGCCTGCTCTTTTCGACACGCAATACTATG
CTGAGACCATGCTGAAGGGTACGGTATGGCCTGG
GTACGTTGCAATTTATCATGCAGTCTTCGTGGCGCCCCTGAATGACCCTGACCTAGCGCTCCGAATATTACTGGCGAAGTCATGTC
TCCGACCCGCTCACAAGTACGACTGGCCTCTGACGTGTTCATCGCACAGG
GTACCTGTCACTCTAACCGCCTATGTTCTTCTTCATGCACATATCCTCATCTGTGGCAACACACCTACTT
ACGCACCTTTCACAGATCCTCGTACCGCTTGCAAGTGGCAAGGCTACGTCAACGATCAGCAAAGGATGCAGTCCGATTTCCAAGCTGCCATGCTCAAAATGTCGCTTCTGGGTCAGGATC
AAAGCGCTCTCACTGACTGCTCAGACGTCATCGAGAATGCACCGCCGCTCCCTCAACCGGCGACATATTTTCCGGACAATTTCACGGTGGCGGATGTCAACCAAACA
GTACGTCTGTTCG
CATTTGGTTCGGCCATCACAACTCCGAGCTGATCTATATTCATGGTCACAGTGTTCTAGCACGCCCTTCCCAAATCTTCCATCCGCCCCAGGTGAGCGAGACGGTTTCTCTCCAAGACTT
GGACGACGAGACTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCTTTCATTGTTGGTCCTGCTTCTTCGCGTCGGCGGTGTCTTACTTCTATCGGCCCAGCTGCAGGTCGCCCGCGGTATTTCGATCGGCTCAAGCCGTAGAGAAGCCTGTCCAGACGGA
ATTCACTCGACCAACAACGCCGTCTGCTGTCCTCTCTTTGCCCTCCGGGACACACTTCAGACCAGCGTGTTCGAAAATACATGTGGCGCCAACTCCCGCCTAGCACTTCGTCTCACGTTT
CACGATGCACTGGGGTATTCAACGACGCGTAACATGGGAGGCGGATCCGATGGTTCTATCATTCAATACGCGGAGATCGAGACAGCATACCCGGCGAATGCGGGGTTGAATGGCATTATT
GGACAGTACTTGGACTTTTACAAGAATAATCAGGTCCCGCTCAGCTATGGAGATTT
TATTCAGTTCGCGGGTGCCGTAGCTATGACCAACTGTCCAGGATCTCCAACGTTACAATTCTTC
ATGGGTCGCCCCGACGCTAAAGGACCTGCATTGAATGGAGCAATATCTAATGCACCTG
ACTCCTCGGATGTGATACTTGCCCGCTTCGCAGATGCAGGCTTCAACAGCGACGAAGTCGTG
ACTCTGTTGGCGTC
ACACTCTGTTGCCAAACAGTCTTCCCTTTCTAGTGCTCCTCTCGATAGCACGCCTGCTCTTTTCGACACGCAATACTATGCTGAGACCATGCTGAAGGGTACGGTA
TGGCCTGG
CGCTCCGAATATTACTGGCGAAGTCATGTCTCCGACCCGCTCACAAGTACGACTGGCCTCTGACGTGTTCATCGCACAGGATCCTCGTACCGCTTGCAAGTGGCAAGGCTAC
GTCAACGATCAGCAAAGGATGCAGTCCGATTTCCAAGCTGCCATGCTCAAAATGTCGCTTCTGGGTCAGGATCAAAGCGCTCTCACTGACTGCTCAGACGTCATCGAGAATGCACCGCCG
CTCCCTCAACCGGCGACATATTTTCCGGACAATTTCACGGTGGCGGATGTCAACCAAACA
TGTTCTAGCACGCCCTTCCCAAATCTTCCATCCGCCCCAGGTGAGCGAGACGGTTTCTCT
CCAAGACTTGGACGACGAGACTGA

Retrieve as FASTA