Entry information : RcoPrx05 (RcPOX1 / RcPrx01)
Entry ID 8550
Creation 2011-02-24 (Christophe Dunand)
Last sequence changes 2015-11-09 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-09 (Achraf Jemmat)
Peroxidase information: RcoPrx05 (RcPOX1 / RcPrx01)
Name (synonym) RcoPrx05 (RcPOX1 / RcPrx01)
Class Class III peroxidase    [Orthogroup: Prx025]
Taxonomy Eukaryota Viridiplantae Streptophyta Rubiaceae Rubia
Organism Rubia cordifolia    [TaxId: 339321 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcoPrx05
start..stop
S start..stop
RcoPrx09 536 0 1..317 3..318
LePrx72 495 7e-179 10..317 10..320
GhPrx04 487 1e-175 16..317 1..303
PatrPrx01 486 2e-175 1..317 1..316
Literature and cross-references RcoPrx05 (RcPOX1 / RcPrx01)
Literature Veremeichik,G.N., Shkryl,Y.N., Bulgakov,V.P., Avramenko,T.V. and Zhuravlev,Y.N. Molecular cloning and characterization of seven class III peroxidases induced by overexpression of the agrobacterial rolB gene in Rubia cordifolia transgenic callus cultures. Plant Cell Rep. 31 (6), 1009-1019 (2012)
mRNA ref. GenBank:   GQ380495.2
Protein sequence: RcoPrx05 (RcPOX1 / RcPrx01)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   317 (294)
PWM (Da):   %s   34001.02 (31460.8) Transmb domain:   %s   i5-27o
PI (pH):   %s   8.48 (8.57) Peptide Signal:   %s   cut: 24 range:24-317
Sequence
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Send to Peroxiscan
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MANSFTYFSL IFIASLLVCF SNAQLSANFY ATTCPNLQTV VRNAMTAAVN KEQRIGASIL RLFFHDCFVN GCDASLLLDD SSSIQSEKNA NPNRNSTRGF DVIDTIKTNV EAACNATVSC  ADILALAARD GVVLLGGPTW TVPLGRRDSR TASLSNANTQ IPAPTSSLST LLSMFSAKGL NAQDMTALSG GHTIGQARCT TFRARIYNDT NIDKPFATAK QANCPVSGGD NNLARLDLQT 
PVKFENNYYK NLVAKKGLLH SDQELFNGGS QDPLVTTYSN NEATFRKDFV AAMIKMGNIS PLTGSSGEIR KNCRLVN 

Retrieve as FASTA  
Remarks Complete sequence.
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCAACT CGTTCACATA CTTCTCCCTT ATTTTCATAG CTTCACTTCT TGTTTGTTTC TCAAATGCAC AACTCTCTGC TAATTTCTAC GCTACCACTT GCCCAAATCT ACAAACAGTT  GTGCGTAACG CTATGACTGC TGCCGTTAAC AAAGAGCAAA GAATCGGCGC CTCTATCCTC CGTCTCTTCT TCCATGACTG CTTCGTGAAT GGCTGCGATG CGAGCCTGTT GCTGGACGAC  TCGTCATCGA TTCAGAGCGA AAAGAATGCG AATCCGAATA GAAACTCAAC GAGAGGGTTC GATGTGATTG ACACCATTAA AACGAATGTT GAAGCAGCTT GTAATGCTAC GGTTTCTTGT  GCTGATATCC TTGCTCTTGC TGCAAGAGAT GGAGTCGTCT TGCTTGGAGG ACCAACGTGG ACAGTACCTC TAGGCAGGAG GGATTCAAGA ACAGCAAGTC TAAGCAATGC AAACACCCAA  ATCCCAGCAC CAACTTCATC TCTTTCAACT CTACTCTCCA TGTTCAGTGC CAAGGGCCTA AACGCCCAAG ACATGACCGC ACTCTCCGGC GGCCACACCA TCGGCCAAGC AAGATGCACC  ACCTTCAGAG CACGCATCTA CAACGACACC AACATCGACA AGCCTTTTGC CACGGCAAAA CAGGCCAACT GCCCGGTTTC CGGCGGTGAC AACAATTTGG CGCGGCTGGA TTTGCAGACC  CCAGTTAAGT TCGAAAACAA CTACTACAAG AACCTTGTGG CTAAGAAGGG GCTTCTTCAT TCCGACCAAG AACTCTTTAA CGGCGGCTCC CAGGATCCTT TGGTGACCAC TTATAGTAAC 
AATGAGGCTA CTTTCCGGAA GGACTTTGTT GCTGCCATGA TCAAGATGGG TAACATTAGC CCTCTTACCG GTTCTAGTGG AGAGATTAGA AAGAACTGCA GACTCGTTAA TTAG 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTTGTAGGGG GAAGGCGCCA GGAGTAATCC GGTTCCCTAT GGGCCAAACA GGGGTTTCAA CGCAGCGTAC GGGGGGCTCC CGCATCCATT CCTTCTACCT GTATATCCTT GATTATCTCT  TGGACTATAT CAACCGTGCC TACCTTTTTC TTATTTCTTC CATGCATCCT TAGAAATGAT TCACTACTCT TTCTTCAGAG CCTATAAATA ACGTGGTACA TCCTGCAAGT TTATAACAAA  AAACAAAGTA CCAAGAAGCA TTTAATCTTC TGTAGCCATG GCCAACTCGT TCACATACTT CTCCCTTATT TTCATAGCTT CACTTCTTGT TTGTTTCTCA AATGCACAAC TCTCTGCTAA  TTTCTACGCT ACCACTTGCC CAAATCTACA AACAGTTGTG CGTAACGCTA TGACTGCTGC CGTTAACAAA GAGCAAAGAA TCGGCGCCTC TATCCTCCGT CTCTTCTTCC ATGACTGCTT  CGTGAATGGC TGCGATGCGA GCCTGTTGCT GGACGACTCG TCATCGATTC AGAGCGAAAA GAATGCGAAT CCGAATAGAA ACTCAACGAG AGGGTTCGAT GTGATTGACA CCATTAAAAC  GAATGTTGAA GCAGCTTGTA ATGCTACGGT TTCTTGTGCT GATATCCTTG CTCTTGCTGC AAGAGATGGA GTCGTCTTGC TTGGAGGACC AACGTGGACA GTACCTCTAG GCAGGAGGGA  TTCAAGAACA GCAAGTCTAA GCAATGCAAA CACCCAAATC CCAGCACCAA CTTCATCTCT TTCAACTCTA CTCTCCATGT TCAGTGCCAA GGGCCTAAAC GCCCAAGACA TGACCGCACT  CTCCGGCGGC CACACCATCG GCCAAGCAAG ATGCACCACC TTCAGAGCAC GCATCTACAA CGACACCAAC ATCGACAAGC CTTTTGCCAC GGCAAAACAG GCCAACTGCC CGGTTTCCGG  CGGTGACAAC AATTTGGCGC GGCTGGATTT GCAGACCCCA GTTAAGTTCG AAAACAACTA CTACAAGAAC CTTGTGGCTA AGAAGGGGCT TCTTCATTCC GACCAAGAAC TCTTTAACGG  CGGCTCCCAG GATCCTTTGG TGACCACTTA TAGTAACAAT GAGGCTACTT TCCGGAAGGA CTTTGTTGCT GCCATGATCA AGATGGGTAA CATTAGCCCT CTTACCGGTT CTAGTGGAGA  GATTAGAAAG AACTGCAGAC TCGTTAATTA GTTACTTGAT TATCGAGACT AAATAATTAT ACTTGTGTTT TCACGTTTTT TCACTTTGAG TATTTCCTTC GTGTAAGCTT GGGGCGTGCA 
TGCATTATGC AGGGATTTCC CCACTCAATT GTAAGATTGA GTTTCTAGTT CCATTTTAAT CCAAAATTAT CACATTTGCA CTAAAAAAAA AA 

Retrieve as FASTA