Entry information : RcoPrx09 (RcPOX5 / RcPrx5)
Entry ID 8554
Creation 2011-02-24 (Christophe Dunand)
Last sequence changes 2015-11-09 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-09 (Achraf Jemmat)
Peroxidase information: RcoPrx09 (RcPOX5 / RcPrx5)
Name (synonym) RcoPrx09 (RcPOX5 / RcPrx5)
Class Class III peroxidase    [Orthogroup: Prx027]
Taxonomy Eukaryota Viridiplantae Streptophyta Rubiaceae Rubia
Organism Rubia cordifolia    [TaxId: 339321 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcoPrx09
start..stop
S start..stop
RcoPrx05 536 0 3..318 1..317
LePrx72 478 4e-172 11..318 12..320
PatrPrx01 473 4e-170 8..318 4..316
CroPrx69 473 4e-170 7..318 4..319
Literature and cross-references RcoPrx09 (RcPOX5 / RcPrx5)
Literature Veremeichik,G.N., Shkryl,Y.N., Bulgakov,V.P., Avramenko,T.V. and Zhuravlev,Y.N. Molecular cloning and characterization of seven class III peroxidases induced by overexpression of the agrobacterial rolB gene in Rubia cordifolia transgenic callus cultures. Plant Cell Rep. 31 (6), 1009-1019 (2012)
mRNA ref. GenBank:   HM807272.1
Protein sequence: RcoPrx09 (RcPOX5 / RcPrx5)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   318 (293)
PWM (Da):   %s   33929.13 (31280.8) Transmb domain:   %s   i7-29o
PI (pH):   %s   9.65 (9.52) Peptide Signal:   %s   cut: 26 range:26-318
Sequence
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Send to Peroxiscan
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MAVASRLAYF FAILMASFLV SSSNAQLSTN FYAKTCPNLQ TVVRNAMTAA VSKERRMGAS ILRLFFHDCF VNGCDAGLLL DDSSSIQSEK NAGPNRNSAR GFDVIDAIKT KVEAACKATV  SCADILALAT RDGVVLLGGP TWAVPLGRRD ARKASLSNAN TQIPGPASSL TTLISMFSAK GLNAQDMTAL SGGHTIGQAQ CVTFRSHIYN DTNINNAFAK ANQAKCPVSG SNSNLAPLDQ 
TPIKFDSQYY KNLVAQKGLL HSDQELFNGG SRDALVRTYS NNEATFRRDF VAAMIKMGNI SPLTGSNGEI RKNCRVIN 

Retrieve as FASTA  
Remarks Complete sequence from genomic.
CDS
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ATGGCTGTTG CATCAAGATT GGCATACTTT TTCGCTATTC TGATGGCTTC ATTTCTTGTT TCATCCTCAA ACGCACAACT CTCTACTAAT TTCTATGCTA AAACTTGCCC AAATCTCCAA  ACAGTTGTGC GCAACGCCAT GACAGCAGCT GTTAGCAAGG AGAGAAGAAT GGGTGCCTCT ATCCTTCGTC TCTTCTTCCA CGATTGCTTT GTAAATGGCT GTGATGCGGG CTTGTTGCTG  GATGATTCAT CGTCGATTCA AAGCGAAAAG AATGCAGGCC CTAACAGAAA TTCAGCAAGA GGGTTCGACG TGATTGACGC CATTAAAACT AAGGTTGAAG CTGCTTGTAA AGCTACAGTT  TCTTGTGCTG ATATCCTAGC TCTTGCAACT AGAGATGGAG TCGTCTTGCT TGGAGGACCA ACATGGGCAG TACCCCTAGG CAGGAGGGAT GCAAGAAAAG CAAGCCTAAG CAATGCAAAC  ACCCAAATCC CCGGGCCAGC CTCATCACTT ACAACTCTCA TCTCCATGTT TAGCGCCAAG GGCCTAAACG CTCAAGACAT GACCGCGCTC TCAGGTGGTC ACACCATCGG CCAAGCCCAA  TGTGTTACCT TCAGATCACA CATCTACAAC GACACCAACA TCAACAATGC TTTTGCTAAG GCAAACCAGG CCAAATGCCC AGTTTCCGGT AGCAATAGCA ATTTGGCACC ACTAGATCAA  ACCCCGATTA AGTTTGATAG CCAATACTAC AAGAACCTTG TGGCTCAGAA GGGGCTTCTT CATTCCGACC AAGAACTCTT TAATGGCGGC TCTCGAGATG CTTTGGTAAG AACTTACAGC 
AACAATGAGG CTACTTTTAG GAGGGACTTT GTTGCTGCGA TGATCAAAAT GGGTAACATT AGCCCTCTTA CGGGCTCTAA TGGAGAGATT AGAAAGAACT GCAGGGTCAT TAACTAA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TCCAATCAAG AACCAATTAT ACTTTTGTAG CCATGGCTGT TGCATCAAGA TTGGCATACT TTTTCGCTAT TCTGATGGCT TCATTTCTTG TTTCATCCTC AAACGCACAA CTCTCTACTA  ATTTCTATGC TAAAACTTGC CCAAATCTCC AAACAGTTGT GCGCAACGCC ATGACAGCAG CTGTTAGCAA GGAGAGAAGA ATGGGTGCCT CTATCCTTCG TCTCTTCTTC CACGATTGCT  TTGTAAATGG CTGTGATGCG GGCTTGTTGC TGGATGATTC ATCGTCGATT CAAAGCGAAA AGAATGCAGG CCCTAACAGA AATTCAGCAA GAGGGTTCGA CGTGATTGAC GCCATTAAAA  CTAAGGTTGA AGCTGCTTGT AAAGCTACAG TTTCTTGTGC TGATATCCTA GCTCTTGCAA CTAGAGATGG AGTCGTCTTG CTTGGAGGAC CAACATGGGC AGTACCCCTA GGCAGGAGGG  ATGCAAGAAA AGCAAGCCTA AGCAATGCAA ACACCCAAAT CCCCGGGCCA GCCTCATCAC TTACAACTCT CATCTCCATG TTTAGCGCCA AGGGCCTAAA CGCTCAAGAC ATGACCGCGC  TCTCAGGTGG TCACACCATC GGCCAAGCCC AATGTGTTAC CTTCAGATCA CACATCTACA ACGACACCAA CATCAACAAT GCTTTTGCTA AGGCAAACCA GGCCAAATGC CCAGTTTCCG  GTAGCAATAG CAATTTGGCA CCACTAGATC AAACCCCGAT TAAGTTTGAT AGCCAATACT ACAAGAACCT TGTGGCTCAG AAGGGGCTTC TTCATTCCGA CCAAGAACTC TTTAATGGCG  GCTCTCGAGA TGCTTTGGTA AGAACTTACA GCAACAATGA GGCTACTTTT AGGAGGGACT TTGTTGCTGC GATGATCAAA ATGGGTAACA TTAGCCCTCT TACGGGCTCT AATGGAGAGA  TTAGAAAGAA CTGCAGGGTC ATTAACTAAT TAATTGACCG AGATTAAATA AGTTGTGTGC TTTAGTAATT TTCTAAGTAA TTTTCCTTAT AATAAAGTTT AGGGCATGCA CGCAAGGCTT 
TGCCCTTTCA AGTGTAAGAC TGAGTTTCTG GTTTCAGTTT TGTTCCACAG TATGTCATTA ATTGTTTAAT TTGATTAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAA 

Retrieve as FASTA