Entry information : RcoPrx10 (RcPOX6 / RcPrx6)
Entry ID 8555
Creation 2011-02-24 (Christophe Dunand)
Last sequence changes 2015-11-09 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-09 (Achraf Jemmat)
Peroxidase information: RcoPrx10 (RcPOX6 / RcPrx6)
Name (synonym) RcoPrx10 (RcPOX6 / RcPrx6)
Class Class III peroxidase    [Orthogroup: Prx008]
Taxonomy Eukaryota Viridiplantae Streptophyta Rubiaceae Rubia
Organism Rubia cordifolia    [TaxId: 339321 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value RcoPrx10
start..stop
S start..stop
GmPrx328 521 0 16..321 16..320
NtPrx78-1A 520 0 22..321 20..319
GmPrx158 518 0 16..321 16..320
NtPrx11-1A 511 0 15..321 16..321
Literature and cross-references RcoPrx10 (RcPOX6 / RcPrx6)
Literature Veremeichik,G.N., Shkryl,Y.N., Bulgakov,V.P., Avramenko,T.V. and Zhuravlev,Y.N. Molecular cloning and characterization of seven class III peroxidases induced by overexpression of the agrobacterial rolB gene in Rubia cordifolia transgenic callus cultures. Plant Cell Rep. 31 (6), 1009-1019 (2012)
mRNA ref. GenBank:   HM807273.1
Protein sequence: RcoPrx10 (RcPOX6 / RcPrx6)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   321
PWM (Da):   %s   34299.05  
PI (pH):   %s   8.31
Sequence
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Send to Peroxiscan
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MASFFIYDQF GCPSALLVSS NTSAQLSENY YYSACPKLYS TVKSTVQSAI AKETRMGASL LRLFFHDCFV NGCDGSILLD DTSSFTGEKK AAPNVNSARG FEVVDDIKAA VEKVCPGVVS  CADILAIAAH DSVEILGGPS WNVKLGRRDA RTASQAAANQ TIPPPTTNLN GLISRFNSFG LSAKDLVALS GSHTIGQARC TNFRARIYNE TNNLDTSLAR TRQGNCPRAT GSGDNNLAPL 
DLETPTRFDN HYFVNLVSRK GLLHSDQQLY NGGSTDTIVR GYSSNPGSFA ADFAAAMIKM GDIKPLTGSK GEVRSNCRRI N 

Retrieve as FASTA  
Remarks Complete sequence.
CDS
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ATGGCTTCGT TCTTCATCTA TGATCAGTTT GGTTGCCCTA GTGCTCTTTT AGTCAGCTCC AACACTTCAG CTCAGCTTTC TGAGAATTAC TATTACTCCG CTTGCCCTAA GCTATATAGC  ACTGTGAAAT CGACGGTCCA ATCTGCAATC GCCAAGGAAA CCCGGATGGG AGCCTCTCTG CTACGCCTGT TTTTCCACGA TTGCTTCGTT AACGGATGCG ATGGCTCGAT CCTCCTAGAT  GATACATCTT CATTTACCGG CGAGAAGAAA GCCGCTCCTA ACGTCAACTC CGCCAGAGGA TTTGAGGTGG TGGACGACAT CAAAGCCGCC GTGGAGAAGG TTTGTCCCGG CGTGGTCTCC  TGCGCCGACA TACTAGCCAT CGCCGCCCAT GACTCCGTCG AAATTCTCGG AGGTCCGAGC TGGAATGTAA AGCTCGGAAG AAGAGACGCG AGAACTGCAA GCCAAGCAGC TGCTAACCAA  ACCATTCCTC CTCCGACAAC GAACCTCAAC GGTCTCATCT CCAGATTCAA TTCCTTCGGC CTCTCCGCCA AAGACCTCGT CGCATTATCA GGATCACACA CGATCGGACA AGCGAGATGC  ACGAACTTCA GGGCGCGCAT ATACAACGAA ACCAACAACC TGGACACTTC CTTGGCCCGA ACGAGGCAGG GCAACTGCCC ACGTGCCACC GGTTCCGGAG ACAACAACCT GGCGCCGCTG  GATCTCGAGA CTCCGACCAG ATTCGACAAC CATTACTTCG TGAACCTGGT GAGCCGGAAG GGGCTGCTGC ACTCCGACCA GCAGCTGTAC AACGGGGGGT CGACGGACAC CATTGTCAGA  GGGTACAGCA GCAACCCCGG CAGCTTCGCG GCGGATTTTG CGGCGGCGAT GATCAAGATG GGTGACATCA AGCCTCTTAC TGGATCCAAG GGGGAAGTCA GGAGCAACTG CCGGAGGATT 
AACTAG 

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cDNA
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TTTTTTTCCC GGGGAAGCCC ACAGAAATAA ATACGCCCCC CCATGGGGCA AGCAGGGGTT TCAACCCCAG AGTACGGGGG ATAACAAACT TAATTTCAAC AGCTAATCAC CAATATGGCT  TCGTTCTTCA TCTATGATCA GTTTGGTTGC CCTAGTGCTC TTTTAGTCAG CTCCAACACT TCAGCTCAGC TTTCTGAGAA TTACTATTAC TCCGCTTGCC CTAAGCTATA TAGCACTGTG  AAATCGACGG TCCAATCTGC AATCGCCAAG GAAACCCGGA TGGGAGCCTC TCTGCTACGC CTGTTTTTCC ACGATTGCTT CGTTAACGGA TGCGATGGCT CGATCCTCCT AGATGATACA  TCTTCATTTA CCGGCGAGAA GAAAGCCGCT CCTAACGTCA ACTCCGCCAG AGGATTTGAG GTGGTGGACG ACATCAAAGC CGCCGTGGAG AAGGTTTGTC CCGGCGTGGT CTCCTGCGCC  GACATACTAG CCATCGCCGC CCATGACTCC GTCGAAATTC TCGGAGGTCC GAGCTGGAAT GTAAAGCTCG GAAGAAGAGA CGCGAGAACT GCAAGCCAAG CAGCTGCTAA CCAAACCATT  CCTCCTCCGA CAACGAACCT CAACGGTCTC ATCTCCAGAT TCAATTCCTT CGGCCTCTCC GCCAAAGACC TCGTCGCATT ATCAGGATCA CACACGATCG GACAAGCGAG ATGCACGAAC  TTCAGGGCGC GCATATACAA CGAAACCAAC AACCTGGACA CTTCCTTGGC CCGAACGAGG CAGGGCAACT GCCCACGTGC CACCGGTTCC GGAGACAACA ACCTGGCGCC GCTGGATCTC  GAGACTCCGA CCAGATTCGA CAACCATTAC TTCGTGAACC TGGTGAGCCG GAAGGGGCTG CTGCACTCCG ACCAGCAGCT GTACAACGGG GGGTCGACGG ACACCATTGT CAGAGGGTAC  AGCAGCAACC CCGGCAGCTT CGCGGCGGAT TTTGCGGCGG CGATGATCAA GATGGGTGAC ATCAAGCCTC TTACTGGATC CAAGGGGGAA GTCAGGAGCA ACTGCCGGAG GATTAACTAG  GCGCCATTTA AAATTGTAGC AAGTTATGAG TTGGTTTCTT TTATGGGTTT TGCATTCTGA ATTAGGCGCC AATTGCTGTA TTTTTATTTT GTTTGTCTCA GTGTTTTTAA AATGTATTTT 
TGAATATATT GCTCAATCTG TCAAAAAAAA AAAAAAAAAA AAAAAAAAA 

Retrieve as FASTA