Entry information : SbPrx107 (SSobic.008G114700.1 [2.1] / Sb08g016840 [1.4])
Entry ID 868
Creation 2008-10-21 (Christophe Dunand)
Last sequence changes 2008-10-21 (Christophe Dunand)
Sequence status complete
Reviewer Messaoudi
Last annotation changes 2014-08-04 (Messaoudi)
Peroxidase information: SbPrx107 (SSobic.008G114700.1 [2.1] / Sb08g016840 [1.4])
Name (synonym) SbPrx107 (SSobic.008G114700.1 [2.1] / Sb08g016840 [1.4])
Class Class III peroxidase    [Orthogroup: Prx013]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Poaceae Sorghum
Organism Sorghum bicolor    [TaxId: 4558 ]
Cellular localisation N/D
Tissue type Seedlings
Inducer Nitrogen starvation
Repressor N/D
Best BLASTp hits
Perox score E-value SbPrx107
start..stop
S start..stop
ZmPrx72 526 0 1..342 7..354
SofPrx05 461 5e-165 1..286 11..296
HvPrx51 457 5e-163 33..333 24..322
OsPrx138 428 2e-151 37..342 37..342
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 45028632..45028880 249 N° 2 45028190..45028547 358 N° 3 45022922..45023355 434  
complement(join(45022922..45023355,45028190..45028547,45028632..45028880))


exon

Literature and cross-references SbPrx107 (SSobic.008G114700.1 [2.1] / Sb08g016840 [1.4])
Literature Cordonnier-Pratt,M.-M. et al., unpublished
DNA ref. Phytozome 12:   chromosome_8 (45028880..45022922)
EST ref. GenBank:   CF434202 [5' end]   CN150521 [5' end]
Protein sequence: SbPrx107 (SSobic.008G114700.1 [2.1] / Sb08g016840 [1.4])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   346 (320)
PWM (Da):   %s   35917.49 (33299.0) Transmb domain:   %s   i9-31o
PI (pH):   %s   8.99 (8.81) Peptide Signal:   %s   cut: 27 range:27-346
Sequence
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTPTSSPPLVVVRLLASAVATMLVLASGGGVCDGAALKAHFYRRSCPAAEAVVRDIVVARVAADPAALPAKLLRLFFHDCFVRGCDASVLLDSTAGNTAEKDAAPNGSLGGFDVIDTAKAVLEAICPGTVSCADIVALAARDAVSLQLGRDLWDVQLGRRDGVVSRASEALADIPSPSDNFTTLEARFGSKGLDVKDLVILSGAHTIGVAHCNTFASRLSGFGSSNSGADPTLNAAYAAQLRSRCGPAPVASSNNVTAVTMDPGSPAGRFDAHYYVNLKLGRGLFASDAALLADRRAAAMIHRLTRKGYFLQEFRNAVRKMGRVGVRTGGRGEIRRNCRAVNSDAM

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 8, introns 1 and 3) and 5 ESTs. long intron...
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACGCCGACGTCGTCGCCACCGCTCGTCGTCGTCCGCCTCCTTGCGTCGGCCGTGGCGACGATGCTGGTGCTCGCGTCCGGCGGCGGCGTTTGCGACGGCGCCGCGCTGAAGGCGCAC
TTCTACCGGCGCAGCTGCCCCGCGGCGGAGGCTGTGGTCCGCGACATCGTGGTGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCGCCAAGCTGCTCCGCCTCTTCTTCCACGACTGC
TTCGTCAGG
GTATGTATGTACGAATACAAATCATCTATCGCCAGTTGCATCATCTGAACCGGCCGGAGCTGATGATGGTGGTTACGTACGTAGGGGTGCGACGCGTCGGTGCTGCTGGAC
TCGACGGCGGGGAACACGGCGGAGAAGGACGCGGCGCCGAACGGGTCGCTGGGAGGCTTCGACGTGATCGACACGGCGAAGGCCGTGCTGGAGGCCATCTGCCCAGGCACCGTCTCCTGC
GCCGACATCGTGGCGCTCGCCGCCAGGGACGCCGTGTCGCTGCAGCTCGGGCGGGACCTGTGGGACGTGCAGCTGGGGCGGCGCGACGGCGTGGTGTCGCGGGCGTCGGAGGCGCTGGCC
GACATCCCTTCGCCGTCGGACAACTTCACCACCCTCGAGGCCAGATTCGGCAGCAAAGGCCTCGACGTCAAGGACCTCGTCATCCTCTCAG
GTAAAGAAAGACTAGTACTCCTATTACTA
CGTGCGTGACGCTGACGTGCGCGTAATAGCTCGGTTATTTTTCGTTTTCACCTGTGCAATAGTAGTACGTAATAGTAGCTATGTGGAATAGACGCAAGCAAGATGATGACGCTTAATGAG
TGCATACCAATGCACCACGGGGCGGCCCAGAAATCCACGCACAAAACGTCAACGTCTGTAGTTTGCTTGCCCAGCTTCACTGTACTCTTCGTGTCGACGAGATGGCGCAGAGATATCAGA
TCGAATTAAAATGTCGATACAAATAAAAAAAAATACACACGATCAGTACGGTGGTTACACTGCGGCTAGCATATGTACTGTACTATACATAGAGCCACCACTCTAGCTATACACCAATCG
AGAGGACGTTAGCCGGAGCAGTGCTCTAAGAGCAAAGTTAATAATACAGTTCATTTGATGACTGTAAAGTTTTCTGCAACTTTATTTTAGTCACTCATATAATAGTTAGCTATTCATTAT
TACTATATGATTCATTTTTCTCTCTTACAAATTTTTTTTTTTGGTTTCTAACCTTACAACCTGCTCCTCCTCTCTTATTTTCTTGTCTTTTTTCTCTACCTCAGTATTTAACCAGCTTAT
AACCAATTATTATACTTGCACTGCTCTAAGCGTGACCGGTCGGTGGTCGCCACTGCGTGGAGCAGCAATGCACGCACATGCGCCGCGACGGCGACGACGGCCGGCGGGCGACGCGCGCAA
CACGGCTTTCCGGGCTCCGGCTTCCAGAGGGCCCAATGCTGCCCGCGCCGCGCGCGTCGCCGTCGCGTGGTGGAGTGCATGCACGTACGCATGCGAGTGCTGGTACGGTGTGATAGATAC
GCGGGTTGCATTGCAATGCAATGCAGGTGGATGCCATGCCATGCCATGCCATGCCATGGCATGAGGGCGCCACGGCCAAGTGTAGAGCCGAAAACGATGGTGCAACCACCACGCGCACCA
TGCACGGCGCACACACACACTGGCAGCGGCTCGTGATCCGTTGTCGGTGCACCGGCCGGGAACAACGCTGATGCATTTGTGCGCCGATCATGCGTGGCCATCCGTTCCTGATAAAGCTAA
GCTATAGCCTAGCTATAGGCCCTGTCTAGATTAGAGATGACTAGACTTATCCTGGAGTAACTAGGTTTAAAAAATTCGTTTCGCGATTTTCAACCAAACTGTGTAATTAGTTTATTTTTA
ATGTATATTTAATGTTCCATGCATGTGTCCAAAGATTCGATGGGATGGATGAAAAAATTTTGTGTGGAAACTAAACAGGGCCTTATTATTATTACTAGCTAGACTGGATAATAAAATCAT
CAGGAGTACCGTACGTTCGAGATTAATTCCAGTTTGACTGAAACCTGCTACTACTCCATCGGCGTTTGTCACGTTCAACTAAAACTGCACTGCAAATTCAGCCATATGCATCGGTCGGGC
TGAATCTTATCAGCCGGCGGGTGCGTGTGCGTACGTGCCGCCAAAAGATTTAGGCCTTGTTTAGTTGCAAAAATTTTTGCAAAATAGGTACCGTAGCTTTTTCGTTTGTATTTGATAAAT
ATTGTCCAATCATGAACTAACTAGGCTTAAAAGATTCGTCTCGTCAATTCCGATCAAACTGTGCAATTAGTTTTTATTTTCGTCTATATTTAATACTCTATGCATGCGTCTAAAGATTCG
ATGTGACGCGGAATCTGAAAAATTTTGCAAAATTTTTTGGAACTAAACAAGGCCTTATGTAGATTTCTTTTTGATGAGGCAATGGAAGCCCACCAGATTTGTTGCATGCATGCTTGCCTT
AATTTGCAGCACGATCAGGCAGGCATCGAACAAGAATGTTGCACTAGTACTAGTGTGCTAGTGTACGGGACTCAATAATGCGCGTGATGCGTGTCATATGTGTCATCAAGACTGCACACG
TACGGAACAAGTTTAGTTAGGCGTAGTGTATATATAGTCTATTATTATCCATATATTCCAAGTCAAAAGCAAACTCGAGACTACTCCTTGATTTTAACGAAAAAAAGGTGACGATCGAGC
CACTTGTACTAACCATGCACGTACTCTCCCACGAGTAAACAAATTAAGTGTCATTTCCATTTTTCTTTATGGAAAGGGAGCTTAGGTACTTATTATAGAATCAAAATTACAATCATGAGC
AATGGTAACTTTGTCAACACATGTTGGATGGTTGAAATGCCATAGATAAGTTGGTTGGGTTCCTTGTGGTGAAACCTGTCCACCCGAGTTTAAATCTTTAACTTGACACGAGTGCTCGTA
TTTTCCTGTGTAATTCTAAAAAAACAAGAAGTCATTTTCGAGACACTCTTAGCTACCAATAAGTAACGACTAGTACCTTGTATATAAACACATAAGTGAGTGGATGCAGGAATTAAGGCA
CTCTTTCCGTCTGTGGATTTATCGATCTAGGCCTTGTTTAGATGCGAAAACATTTTGGTTTTCGTTACTGTAGCACTTTGGTTTGTTTGTGGCAAAGATTGTCTAATCATAGACTAATTA
GGGTTAAAAGATCCGTCTCGTGATTTATAAGCAAACTGTGTAATTAGTTTTTATTTTCATCTATATTTAATGTTTCATGTATGTGCCACAAGATTCGATGTGACGAGAAATCCTAAAAAC
TTTTTGGTTTTTAGAGTGAACTAAACAAGGCCCTATATTTGCAATGTATGTACCAGCGTTACAACTACACACTGTGCCTGCCATACTAAACTGATGAATTTATAGAGAGGTAATTAATTA
GTAAGGTAGCCACGCACTGAAGATTATTTGAATGGCAAAAAAAGGTGCAAGTGTGTCACCATTGAAGAATGTGCCTGGTTTAGATGCGAAAAGATTTTGGATTTCGATACTTTAGCACTT
TCGTTTGTTTGTGGCAAATATTGTCCAATCATAAACTAACTAGGATCAAAAGATTCGTCTCACGATTTACAGTTAAACTGTACAATTAGTTTTTATTTTTATTTATATTTAATGCTTCAT
GCATGTGCTGAAAGATTCGATGTGACAGAAAATCTTGAAAACTTTTTGATTTTTGGGGTGAACTAAACAAGGCCTTAGTAGCCAGCAGTAGCAAGTAGCAGCCTGTGCACCGCCACTGGT
GGTTAGAGACGGCATGGAATCTAATCTCTTTCCTGCAGCTGCAGCTAGCTAGCTAGCTAGCTAGATAGATAGACAGCACCTCAACCGGCCGCCCTAACGGGTAACTGCCAACAAATGCTA
GTGGCCGCCACTCCTAACTAACATCCATCTCTAATTTGCCCAAGCATATCCTATCCTAGCAGCAATGCAATTGCAAGCTGTAGTGCAACAGCAACAGCAATGCGATCGAGGGTTTCATTG
GGCTCATGACCATTAATTAATTGATTGAGGTTCCAGGGGCCTGATGCATACAGTACAGTAGTTGTCACTGTTTCCACATACGCCCAAAAACGAGCACAGTTTGTACATTCCATAATTAAT
TCAATGGTTTATCTTGTATCGTGAACTTTAGTATATTGTTATATAATTTTTTTTTTGTTAAATTTCAAATCCTTTGAGTCCTTGGAAAGTAAGAACTGTATTTTTTTTAAACGGGAGCAT
GATACTATTGTGACTCGATTTTGTACACTTCATCAGTATACAAACCGTACCAAATGCCAAGCGGTTGGACCGCATTTGCCGATAACCAGGCTTTGGATTGGGTTGCACGGCCACTAGCGT
GTGTACTACCTGGACCACCGCGCGCGCACGAAATAGTGGCTCAACCACCGAATCCACGGCGGGCTTGGTCCCACGCAAACTCCAACATGCTCTGCTCCGGACCTCCGTCCATCATCACAC
GTTGGACCCACTCACCCACTGGTACAGTCCAGTACAAACAATTATAGTAATTAGGGTCTAGTTTAGTTCCAATTTTTTTTAGATTTAGCTAATTTAGCATTTTCGTTTTATTTAACAATT
AGTGCCCAATCATAAACTAACTAGGGTTAAAAATTTCATCTCGCGGTTTACATGCTGTACAATTAGTTATTGTTGTCATCAACTTCATGAGTTATTGTAAGCTATTTACAGGTAAACTTA
CAATTAATTATAATATTTAAGGTCTGTTTGACACAGCTCATAACAGCTTCATGAGTTATTGTGAGCTATTTTATTCAAACATTTATTTCTAAAACAACTTTACTCAGGAAACTATTTTTA
TCCCCATCACAAAGACATGAGTTAGAATGAAGCTGAAAAAAATTTATCCTAGCTCTCTTTCTCATTTTCTCTTCTATCCATGCATAAAACTGTTGGTGAAGCTGTTTTGCCAAACAGTTT
TCCAAAACAGTTTCGCTTCACCTGGAAAGTTACTCATAAAATTATTCTTTGCAAAAAAAAAAGTTTTACTAGTGAAGCTGAGCCGTGTCAAATAAGCCCTAAATACTCTATATATGTGTT
TGAAAATTTGATGTGATAGATGAAATAAATACTTCATATATATGGCCTTGTTTAGTTCACCCCAAAAACCAAAAAGTTTTCAAGATTCTTTGTCACATCGAATTTTTCGGCACATATATG
AAGCATTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTAGTTGTAAATCGCGAGACAAATCTTTTGATTCTAGGTAATCCATGATTGGACAATATTTGTCACAAACAAACGAAAG
TGCTACGGTAGCGACATCCAAAATCTTTTCACATCTAAACAAAGCCATGTTTAAAATTTTGATGCGATAGATGAAAAGGTTTTAGGTAGAAAAATAAACAAGGCCTTATGCACTGATGCA
TGCAGGCGCGCACACGATCGGCGTGGCCCACTGCAACACCTTCGCGTCACGCCTCTCCGGCTTCGGCAGCTCCAACTCCGGCGCCGACCCGACGCTGAACGCGGCGTACGCGGCGCAGCT
CCGGTCGCGGTGCGGTCCGGCGCCGGTGGCCTCGTCGAACAACGTGACGGCGGTGACCATGGACCCGGGAAGCCCCGCGGGGCGGTTCGACGCGCACTACTACGTGAACCTGAAGCTGGG
GCGGGGCCTGTTCGCGTCCGACGCCGCGCTGCTCGCCGACCGCCGCGCCGCCGCCATGATCCACCGCCTCACCAGGAAGGGCTACTTCCTCCAGGAGTTCAGGAACGCCGTTCGCAAGAT
GGGGCGCGTCGGCGTGCGCACCGGCGGCCGCGGGGAGATCCGCCGGAACTGCAGGGCGGTCAACTCAGATGCTATGTGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACGCCGACGTCGTCGCCACCGCTCGTCGTCGTCCGCCTCCTTGCGTCGGCCGTGGCGACGATGCTGGTGCTCGCGTCCGGCGGCGGCGTTTGCGACGGCGCCGCGCTGAAGGCGCAC
TTCTACCGGCGCAGCTGCCCCGCGGCGGAGGCTGTGGTCCGCGACATCGTGGTGGCGCGCGTCGCCGCCGACCCCGCCGCGCTCCCCGCCAAGCTGCTCCGCCTCTTCTTCCACGACTGC
TTCGTCAGG
GGGTGCGACGCGTCGGTGCTGCTGGACTCGACGGCGGGGAACACGGCGGAGAAGGACGCGGCGCCGAACGGGTCGCTGGGAGGCTTCGACGTGATCGACACGGCGAAGGCC
GTGCTGGAGGCCATCTGCCCAGGCACCGTCTCCTGCGCCGACATCGTGGCGCTCGCCGCCAGGGACGCCGTGTCGCTGCAGCTCGGGCGGGACCTGTGGGACGTGCAGCTGGGGCGGCGC
GACGGCGTGGTGTCGCGGGCGTCGGAGGCGCTGGCCGACATCCCTTCGCCGTCGGACAACTTCACCACCCTCGAGGCCAGATTCGGCAGCAAAGGCCTCGACGTCAAGGACCTCGTCATC
CTCTCAG
GCGCGCACACGATCGGCGTGGCCCACTGCAACACCTTCGCGTCACGCCTCTCCGGCTTCGGCAGCTCCAACTCCGGCGCCGACCCGACGCTGAACGCGGCGTACGCGGCGCAG
CTCCGGTCGCGGTGCGGTCCGGCGCCGGTGGCCTCGTCGAACAACGTGACGGCGGTGACCATGGACCCGGGAAGCCCCGCGGGGCGGTTCGACGCGCACTACTACGTGAACCTGAAGCTG
GGGCGGGGCCTGTTCGCGTCCGACGCCGCGCTGCTCGCCGACCGCCGCGCCGCCGCCATGATCCACCGCCTCACCAGGAAGGGCTACTTCCTCCAGGAGTTCAGGAACGCCGTTCGCAAG
ATGGGGCGCGTCGGCGTGCGCACCGGCGGCCGCGGGGAGATCCGCCGGAACTGCAGGGCGGTCAACTCAGATGCTATGTGA

Retrieve as FASTA